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stox1 storkhead box 1 [ Lepisosteus oculatus (spotted gar) ]

Gene ID: 102688774, updated on 10-Mar-2024

Summary

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Gene symbol
stox1
Gene description
storkhead box 1
See related
Ensembl:ENSLOCG00000009290
Gene type
protein coding
RefSeq status
MODEL
Organism
Lepisosteus oculatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Holostei; Semionotiformes; Lepisosteidae; Lepisosteus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG5
Exon count:
4
Annotation release Status Assembly LG Location
101 current LepOcu1 (GCF_000242695.1) LG5 NC_023183.1 (18153117..18183334, complement)

Linkage Group LG5 - NC_023183.1Genomic Context describing neighboring genes Neighboring gene phenazine biosynthesis like protein domain containing Neighboring gene DNA replication helicase/nuclease 2 Neighboring gene cell division cycle and apoptosis regulator 1 Neighboring gene uncharacterized LOC102689177

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_023183.1 Chromosome LG5 Reference LepOcu1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription activator activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
storkhead-box protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Lepisosteus oculatus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference LepOcu1 Primary Assembly

Genomic

  1. NC_023183.1 Reference LepOcu1 Primary Assembly

    Range
    18153117..18183334 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006630575.2 → XP_006630638.1  storkhead-box protein 1

    UniProtKB/TrEMBL
    W5MSG9, W5MSH7
    Related
    ENSLOCP00000011328.1, ENSLOCT00000011344.1
    Conserved Domains (1) summary
    pfam10264
    Location:119 → 195
    Stork_head; Winged helix Storkhead-box1 domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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