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toporsa topoisomerase I binding, arginine/serine-rich a [ Lepisosteus oculatus (spotted gar) ]

Gene ID: 102686125, updated on 10-Mar-2024

Summary

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Gene symbol
toporsa
Gene description
topoisomerase I binding, arginine/serine-rich a
See related
Ensembl:ENSLOCG00000017928
Gene type
protein coding
RefSeq status
MODEL
Organism
Lepisosteus oculatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Holostei; Semionotiformes; Lepisosteidae; Lepisosteus
Also known as
topors
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG4
Exon count:
3
Annotation release Status Assembly LG Location
101 current LepOcu1 (GCF_000242695.1) LG4 NC_023182.1 (66614075..66619751)

Linkage Group LG4 - NC_023182.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107077200 Neighboring gene NADH:ubiquinone oxidoreductase subunit B Neighboring gene RNA sensor RIG-I Neighboring gene methylthioadenosine phosphorylase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_023182.1 Chromosome LG4 Reference LepOcu1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein monoubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein polyubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
E3 ubiquitin-protein ligase Topors
Names
TOP1 binding arginine/serine rich protein, E3 ubiquitin ligase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Lepisosteus oculatus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference LepOcu1 Primary Assembly

Genomic

  1. NC_023182.1 Reference LepOcu1 Primary Assembly

    Range
    66614075..66619751
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015345928.1 → XP_015201414.1  E3 ubiquitin-protein ligase Topors

    UniProtKB/TrEMBL
    W5NN22
    Conserved Domains (1) summary
    cd00162
    Location:36 → 79
    RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...

  2. XM_015345926.1 → XP_015201412.1  E3 ubiquitin-protein ligase Topors

    UniProtKB/TrEMBL
    W5NN22
    Conserved Domains (1) summary
    cd00162
    Location:36 → 79
    RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...

  3. XM_015345927.1 → XP_015201413.1  E3 ubiquitin-protein ligase Topors

    UniProtKB/TrEMBL
    W5NN22
    Conserved Domains (1) summary
    cd00162
    Location:36 → 79
    RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...

  4. XM_015345925.1 → XP_015201411.1  E3 ubiquitin-protein ligase Topors

    UniProtKB/TrEMBL
    W5NN22
    Related
    ENSLOCP00000022031.1, ENSLOCT00000022070.1
    Conserved Domains (1) summary
    cd00162
    Location:36 → 79
    RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...
Nucleotide Protein
Heading Accession and Version

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