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thumpd3 THUMP domain containing 3 [ Lepisosteus oculatus (spotted gar) ]

Gene ID: 102683512, updated on 10-Mar-2024

Summary

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Gene symbol
thumpd3
Gene description
THUMP domain containing 3
See related
Ensembl:ENSLOCG00000009800
Gene type
protein coding
RefSeq status
MODEL
Organism
Lepisosteus oculatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Holostei; Semionotiformes; Lepisosteidae; Lepisosteus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG5
Exon count:
11
Annotation release Status Assembly LG Location
101 current LepOcu1 (GCF_000242695.1) LG5 NC_023183.1 (20341727..20348976)

Linkage Group LG5 - NC_023183.1Genomic Context describing neighboring genes Neighboring gene peroxiredoxin 3 Neighboring gene SLIT-ROBO Rho GTPase activating protein 3 Neighboring gene contactin-4-like Neighboring gene contactin-4-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_023183.1 Chromosome LG5 Reference LepOcu1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables tRNA (guanine) methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in tRNA methylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
THUMP domain-containing protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Lepisosteus oculatus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference LepOcu1 Primary Assembly

Genomic

  1. NC_023183.1 Reference LepOcu1 Primary Assembly

    Range
    20341727..20348976
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015347072.1 → XP_015202558.1  THUMP domain-containing protein 3

    UniProtKB/TrEMBL
    W5MUB7, W5MUC3
    Conserved Domains (2) summary
    smart00981
    Location:235 → 292
    THUMP; The THUMP domain is named after after thiouridine synthases, methylases and PSUSs
    cl17173
    Location:302 → 486
    AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...

  2. XM_015347073.1 → XP_015202559.1  THUMP domain-containing protein 3

    UniProtKB/TrEMBL
    W5MUB7, W5MUC3
    Related
    ENSLOCP00000011976.1, ENSLOCT00000011997.1
    Conserved Domains (2) summary
    smart00981
    Location:235 → 292
    THUMP; The THUMP domain is named after after thiouridine synthases, methylases and PSUSs
    cl17173
    Location:302 → 486
    AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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