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lmod1b leiomodin 1b (smooth muscle) [ Lepisosteus oculatus (spotted gar) ]

Gene ID: 102682557, updated on 10-Mar-2024

Summary

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Gene symbol
lmod1b
Gene description
leiomodin 1b (smooth muscle)
See related
Ensembl:ENSLOCG00000010089
Gene type
protein coding
RefSeq status
MODEL
Organism
Lepisosteus oculatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Holostei; Semionotiformes; Lepisosteidae; Lepisosteus
Also known as
lmod1
Orthologs
human zebrafish all
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Genomic context

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See lmod1b in Genome Data Viewer
Location:
chromosome: LG3
Exon count:
3
Annotation release Status Assembly LG Location
101 current LepOcu1 (GCF_000242695.1) LG3 NC_023181.1 (26468251..26485225, complement)

Linkage Group LG3 - NC_023181.1Genomic Context describing neighboring genes Neighboring gene arginyl aminopeptidase (aminopeptidase B) Neighboring gene translocase of inner mitochondrial membrane 17 homolog A (yeast) Neighboring gene shisa family member 4 Neighboring gene importin 9

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_023181.1 Chromosome LG3 Reference LepOcu1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables actin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables tropomyosin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in muscle contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in myofibril assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in pointed-end actin filament capping IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in myofibril IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in striated muscle thin filament IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
leiomodin-1
Names
leiomodin 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Lepisosteus oculatus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference LepOcu1 Primary Assembly

Genomic

  1. NC_023181.1 Reference LepOcu1 Primary Assembly

    Range
    26468251..26485225 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015342368.1 → XP_015197854.1  leiomodin-1

    UniProtKB/TrEMBL
    W5MVD2
    Related
    ENSLOCP00000012341.1, ENSLOCT00000012362.1
    Conserved Domains (2) summary
    cd00116
    Location:319 → 450
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    pfam03250
    Location:7 → 114
    Tropomodulin; Tropomodulin
Nucleotide Protein
Heading Accession and Version

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