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LOC102665715 G-box-binding factor 1 [ Glycine max (soybean) ]

Gene ID: 102665715, updated on 7-Dec-2023

Summary

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Gene symbol
LOC102665715
Gene description
G-box-binding factor 1
Locus tag
GLYMA_20G007700v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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Genomic context

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Location:
chromosome: 20
Exon count:
14
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 20 NC_038256.2 (704079..710058, complement)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 20 NC_038256.1 (704849..710867, complement)

Chromosome 20 - NC_038256.2Genomic Context describing neighboring genes Neighboring gene pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha Neighboring gene pentatricopeptide repeat-containing protein At3g48810-like Neighboring gene UPF0326 protein At4g17486-like Neighboring gene transfer RNA glutamine (anticodon CUG)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
G-box-binding factor 1; uncharacterized protein LOC102665715

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_038256.2 Reference Glycine_max_v4.0 Primary Assembly

    Range
    704079..710058 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026127300.2 → XP_025983085.1  G-box-binding factor 1 isoform X1

    UniProtKB/TrEMBL
    A0A0R0E569, I1ND16
    Conserved Domains (1) summary
    cd14702
    Location:216 → 266
    bZIP_plant_GBF1; Basic leucine zipper (bZIP) domain of Plant G-box binding factor 1 (GBF1)-like transcription factors: a DNA-binding and dimerization domain

  2. XM_006605400.3 → XP_006605463.1  uncharacterized protein LOC102665715 isoform X2

    UniProtKB/TrEMBL
    A0A0R0EGF0, K7N0M3
    Conserved Domains (1) summary
    cd14702
    Location:141 → 191
    bZIP_plant_GBF1; Basic leucine zipper (bZIP) domain of Plant G-box binding factor 1 (GBF1)-like transcription factors: a DNA-binding and dimerization domain

  3. XM_006605398.3 → XP_006605461.1  G-box-binding factor 1 isoform X1

    See identical proteins and their annotated locations for XP_006605461.1

    UniProtKB/TrEMBL
    A0A0R0E569, I1ND16
    Conserved Domains (1) summary
    cd14702
    Location:216 → 266
    bZIP_plant_GBF1; Basic leucine zipper (bZIP) domain of Plant G-box binding factor 1 (GBF1)-like transcription factors: a DNA-binding and dimerization domain

  4. XM_041013106.1 → XP_040869040.1  uncharacterized protein LOC102665715 isoform X2

    UniProtKB/TrEMBL
    A0A0R0EGF0, K7N0M3
    Conserved Domains (1) summary
    cd14702
    Location:141 → 191
    bZIP_plant_GBF1; Basic leucine zipper (bZIP) domain of Plant G-box binding factor 1 (GBF1)-like transcription factors: a DNA-binding and dimerization domain

  5. XM_006605399.4 → XP_006605462.1  G-box-binding factor 1 isoform X1

    See identical proteins and their annotated locations for XP_006605462.1

    UniProtKB/TrEMBL
    A0A0R0E569, I1ND16
    Conserved Domains (1) summary
    cd14702
    Location:216 → 266
    bZIP_plant_GBF1; Basic leucine zipper (bZIP) domain of Plant G-box binding factor 1 (GBF1)-like transcription factors: a DNA-binding and dimerization domain
Nucleotide Protein
Heading Accession and Version

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Other Literature Sources
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