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BRWD3 bromodomain and WD repeat domain containing 3 [ Alligator mississippiensis (American alligator) ]

Gene ID: 102576125, updated on 10-Mar-2024

Summary

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Gene symbol
BRWD3
Gene description
bromodomain and WD repeat domain containing 3
Locus tag
Y1Q_0015662
Gene type
protein coding
RefSeq status
MODEL
Organism
Alligator mississippiensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae; Alligator
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 8
Exon count:
40
Annotation release Status Assembly Chr Location
RS_2023_09 current rAllMis1 (GCF_030867095.1) 8 NC_081831.1 (58356599..58462562)
102 previous assembly ASM28112v4 (GCF_000281125.3) Unplaced Scaffold NW_017709938.1 (15067318..15170783, complement)

Chromosome 8 - NC_081831.1Genomic Context describing neighboring genes Neighboring gene high mobility group nucleosome binding domain 5 Neighboring gene uncharacterized LOC109283269 Neighboring gene U6 spliceosomal RNA Neighboring gene syntaxin-1B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell shape IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
bromodomain and WD repeat-containing protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030867095.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rAllMis1 Primary Assembly

Genomic

  1. NC_081831.1 Reference rAllMis1 Primary Assembly

    Range
    58356599..58462562
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006264396.4 → XP_006264458.2  bromodomain and WD repeat-containing protein 3

    UniProtKB/TrEMBL
    A0A151NNK5
    Conserved Domains (5) summary
    cd05529
    Location:1137 → 1249
    Bromo_WDR9_I_like; Bromodomain; WDR9 repeat I_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional ...
    COG2319
    Location:178 → 543
    WD40; WD40 repeat [General function prediction only]
    cd00200
    Location:175 → 497
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:186 → 223
    7WD40; WD40 repeat [structural motif]
    cl02556
    Location:1312 → 1424
    Bromodomain; Bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Nucleotide Protein
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