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PCDH9 protocadherin 9 [ Alligator mississippiensis (American alligator) ]

Gene ID: 102573180, updated on 10-Mar-2024

Summary

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Gene symbol
PCDH9
Gene description
protocadherin 9
Locus tag
Y1Q_0017206
Gene type
protein coding
RefSeq status
MODEL
Organism
Alligator mississippiensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae; Alligator
Also known as
PCDH20
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 1
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2023_09 current rAllMis1 (GCF_030867095.1) 1 NC_081824.1 (395322767..396342186)
102 previous assembly ASM28112v4 (GCF_000281125.3) Unplaced Scaffold NW_017710136.1 (515138..1999037, complement)

Chromosome 1 - NC_081824.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC109283450 Neighboring gene uncharacterized LOC132248641 Neighboring gene uncharacterized LOC109283467 Neighboring gene uncharacterized LOC132248683 Neighboring gene uncharacterized LOC132248688

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protocadherin-9
Names
protocadherin 20

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030867095.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rAllMis1 Primary Assembly

Genomic

  1. NC_081824.1 Reference rAllMis1 Primary Assembly

    Range
    395322767..396342186
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_059722410.1 → XP_059578393.1  protocadherin-9 isoform X1

  2. XM_019488559.2 → XP_019344104.1  protocadherin-9 isoform X2

  3. XM_059722502.1 → XP_059578485.1  protocadherin-9 isoform X5

  4. XM_019488561.2 → XP_019344106.1  protocadherin-9 isoform X3

  5. XM_019488562.2 → XP_019344107.1  protocadherin-9 isoform X4

  6. XM_006266944.3 → XP_006267006.1  protocadherin-9 isoform X6

    UniProtKB/TrEMBL
    A0A151NKR2
    Conserved Domains (3) summary
    cd11304
    Location:576 → 671
    Cadherin_repeat; Cadherin tandem repeat domain
    pfam08374
    Location:777 → 997
    Protocadherin; Protocadherin
    cl09101
    Location:28 → 117
    E_set; Early set domain associated with the catalytic domain of sugar utilizing enzymes at either the N or C terminus
Nucleotide Protein
Heading Accession and Version

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