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CACNG4 calcium voltage-gated channel auxiliary subunit gamma 4 [ Alligator mississippiensis (American alligator) ]

Gene ID: 102572607, updated on 10-Mar-2024

Summary

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Gene symbol
CACNG4
Gene description
calcium voltage-gated channel auxiliary subunit gamma 4
Locus tag
Y1Q_0016362
Gene type
protein coding
RefSeq status
MODEL
Organism
Alligator mississippiensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae; Alligator
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 8
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_09 current rAllMis1 (GCF_030867095.1) 8 NC_081831.1 (5680152..5739165)
102 previous assembly ASM28112v4 (GCF_000281125.3) Unplaced Scaffold NW_017711527.1 (3491409..3549249)

Chromosome 8 - NC_081831.1Genomic Context describing neighboring genes Neighboring gene protein kinase C alpha Neighboring gene transfer RNA tryptophan (anticodon CCA) Neighboring gene calcium voltage-gated channel auxiliary subunit gamma 5 Neighboring gene calcium voltage-gated channel auxiliary subunit gamma 1 Neighboring gene helicase with zinc finger

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables channel regulator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables voltage-gated calcium channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in calcium ion transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in neurotransmitter receptor internalization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in neurotransmitter receptor transport, postsynaptic endosome to lysosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of synaptic transmission, glutamatergic IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in postsynaptic neurotransmitter receptor diffusion trapping IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of AMPA receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transmission of nerve impulse IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of AMPA glutamate receptor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in postsynaptic density membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of voltage-gated calcium channel complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
voltage-dependent calcium channel gamma-4 subunit

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030867095.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rAllMis1 Primary Assembly

Genomic

  1. NC_081831.1 Reference rAllMis1 Primary Assembly

    Range
    5680152..5739165
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006260268.3 → XP_006260330.1  voltage-dependent calcium channel gamma-4 subunit

    UniProtKB/TrEMBL
    A0A151N2A9
    Conserved Domains (1) summary
    cl21598
    Location:6 → 203
    PMP22_Claudin; PMP-22/EMP/MP20/Claudin family
Nucleotide Protein
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