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L3MBTL2 L3MBTL histone methyl-lysine binding protein 2 [ Alligator mississippiensis (American alligator) ]

Gene ID: 102571394, updated on 3-Apr-2024

Summary

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Gene symbol
L3MBTL2
Gene description
L3MBTL histone methyl-lysine binding protein 2
Locus tag
Y1Q_0024038
Gene type
protein coding
RefSeq status
MODEL
Organism
Alligator mississippiensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae; Alligator
Orthologs
human mouse all
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Genomic context

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See L3MBTL2 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
18
Annotation release Status Assembly Chr Location
RS_2023_09 current rAllMis1 (GCF_030867095.1) 4 NC_081827.1 (97474848..97505527, complement)
102 previous assembly ASM28112v4 (GCF_000281125.3) Unplaced Scaffold NW_017710370.1 (1453141..1478937, complement)

Chromosome 4 - NC_081827.1Genomic Context describing neighboring genes Neighboring gene chondroadherin Neighboring gene chondroadherin like Neighboring gene uncharacterized LOC109283600 Neighboring gene E1A binding protein p300

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables methylated histone binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
lethal(3)malignant brain tumor-like protein 2
Names
L3MBTL2, polycomb repressive complex 1 subunit
mbt domain-containing 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030867095.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rAllMis1 Primary Assembly

Genomic

  1. NC_081827.1 Reference rAllMis1 Primary Assembly

    Range
    97474848..97505527 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_059726364.1 → XP_059582347.1  lethal(3)malignant brain tumor-like protein 2 isoform X5

  2. XM_006258549.4 → XP_006258611.1  lethal(3)malignant brain tumor-like protein 2 isoform X6

    UniProtKB/TrEMBL
    A0A151NHI0, A0A151NHI9
    Conserved Domains (2) summary
    smart00561
    Location:527 → 620
    MBT; Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2
    pfam02820
    Location:449 → 520
    MBT; mbt repeat

  3. XM_059726362.1 → XP_059582345.1  lethal(3)malignant brain tumor-like protein 2 isoform X2

  4. XM_059726361.1 → XP_059582344.1  lethal(3)malignant brain tumor-like protein 2 isoform X1

  5. XM_019489597.2 → XP_019345142.1  lethal(3)malignant brain tumor-like protein 2 isoform X4

    UniProtKB/TrEMBL
    A0A151NHI0

  6. XM_059726363.1 → XP_059582346.1  lethal(3)malignant brain tumor-like protein 2 isoform X3

  7. XM_059726365.1 → XP_059582348.1  lethal(3)malignant brain tumor-like protein 2 isoform X7

Nucleotide Protein
Heading Accession and Version

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