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PRKAA1 protein kinase AMP-activated catalytic subunit alpha 1 [ Alligator mississippiensis (American alligator) ]

Gene ID: 102570371, updated on 3-Apr-2024

Summary

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Gene symbol
PRKAA1
Gene description
protein kinase AMP-activated catalytic subunit alpha 1
Locus tag
Y1Q_0009849
Gene type
protein coding
RefSeq status
MODEL
Organism
Alligator mississippiensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae; Alligator
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 3
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2023_09 current rAllMis1 (GCF_030867095.1) 3 NC_081826.1 (275806753..275837877)
102 previous assembly ASM28112v4 (GCF_000281125.3) Unplaced Scaffold NW_017712138.1 (22491996..22523426, complement)

Chromosome 3 - NC_081826.1Genomic Context describing neighboring genes Neighboring gene complement C7 Neighboring gene small nucleolar RNA SNORD72 Neighboring gene ribosomal protein L37 Neighboring gene tetratricopeptide repeat domain 33 Neighboring gene prostaglandin E receptor 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables AMP-activated protein kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intracellular signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein phosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
5'-AMP-activated protein kinase catalytic subunit alpha-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030867095.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rAllMis1 Primary Assembly

Genomic

  1. NC_081826.1 Reference rAllMis1 Primary Assembly

    Range
    275806753..275837877
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006277874.4 → XP_006277936.1  5'-AMP-activated protein kinase catalytic subunit alpha-1 isoform X1

    UniProtKB/TrEMBL
    A0A151MX04
    Conserved Domains (4) summary
    cd12199
    Location:405 → 554
    AMPKA1_C; C-terminal regulatory domain of 5'-AMP-activated protein kinase (AMPK) alpha 1 catalytic subunit
    smart00220
    Location:28 → 280
    S_TKc; Serine/Threonine protein kinases, catalytic domain
    cd14403
    Location:297 → 361
    UBA_AID_AAPK1; UBA-like autoinhibitory domain (AID) found in vertebrate 5'-AMP-activated protein kinase catalytic subunit alpha-1 (AMPKalpha-1)
    cd14079
    Location:25 → 280
    STKc_AMPK_alpha; Catalytic domain of the Alpha subunit of the Serine/Threonine Kinase, AMP-activated protein kinase

  2. XM_019496022.2 → XP_019351567.1  5'-AMP-activated protein kinase catalytic subunit alpha-1 isoform X2

    UniProtKB/TrEMBL
    A0A151MX04

  3. XM_059725209.1 → XP_059581192.1  5'-AMP-activated protein kinase catalytic subunit alpha-1 isoform X2

  4. XM_019496023.2 → XP_019351568.1  5'-AMP-activated protein kinase catalytic subunit alpha-1 isoform X2

    UniProtKB/TrEMBL
    A0A151MX04
Nucleotide Protein
Heading Accession and Version

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