U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

HM13 histocompatibility minor 13 [ Alligator mississippiensis (American alligator) ]

Gene ID: 102569728, updated on 10-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
HM13
Gene description
histocompatibility minor 13
Locus tag
Y1Q_0020272
Gene type
protein coding
RefSeq status
MODEL
Organism
Alligator mississippiensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae; Alligator
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See HM13 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2023_09 current rAllMis1 (GCF_030867095.1) 9 NC_081832.1 (1701412..1715544, complement)
102 previous assembly ASM28112v4 (GCF_000281125.3) Unplaced Scaffold NW_017713516.1 (7859..22015)

Chromosome 9 - NC_081832.1Genomic Context describing neighboring genes Neighboring gene bactericidal permeability-increasing protein Neighboring gene inhibitor of DNA binding 1 Neighboring gene chromosome 9 C20orf96 homolog Neighboring gene RRAD and GEM like GTPase 1

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables aspartic endopeptidase activity, intramembrane cleaving IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in membrane protein proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in signal peptide processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasmic side of endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in lumenal side of endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
minor histocompatibility antigen H13

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_030867095.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rAllMis1 Primary Assembly

Genomic

  1. NC_081832.1 Reference rAllMis1 Primary Assembly

    Range
    1701412..1715544 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006274281.4 → XP_006274343.2  minor histocompatibility antigen H13 isoform X2

    UniProtKB/TrEMBL
    A0A151MI19
    Conserved Domains (1) summary
    pfam04258
    Location:61 → 348
    Peptidase_A22B; Signal peptide peptidase

  2. XM_019500354.2 → XP_019355899.1  minor histocompatibility antigen H13 isoform X1

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.