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PLXNB2 plexin B2 [ Alligator mississippiensis (American alligator) ]

Gene ID: 102568618, updated on 3-Apr-2024

Summary

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Gene symbol
PLXNB2
Gene description
plexin B2
Locus tag
Y1Q_0019636
Gene type
protein coding
RefSeq status
MODEL
Organism
Alligator mississippiensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae; Alligator
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 4
Exon count:
41
Annotation release Status Assembly Chr Location
RS_2023_09 current rAllMis1 (GCF_030867095.1) 4 NC_081827.1 (40227483..40573411, complement)
102 previous assembly ASM28112v4 (GCF_000281125.3) Unplaced Scaffold NW_017707830.1 (5599426..5937688, complement)

Chromosome 4 - NC_081827.1Genomic Context describing neighboring genes Neighboring gene mitogen-activated protein kinase 12 Neighboring gene mitogen-activated protein kinase 11 Neighboring gene uncharacterized LOC109284206 Neighboring gene uncharacterized LOC132249984 Neighboring gene uncharacterized LOC132249813

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables semaphorin receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of axonogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of GTPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell shape IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in semaphorin-plexin signaling pathway involved in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of semaphorin receptor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
plexin-B2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030867095.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rAllMis1 Primary Assembly

Genomic

  1. NC_081827.1 Reference rAllMis1 Primary Assembly

    Range
    40227483..40573411 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014601042.3 → XP_014456528.1  plexin-B2

    UniProtKB/TrEMBL
    A0A151PEI4
    Conserved Domains (5) summary
    smart00423
    Location:758 → 805
    PSI; domain found in Plexins, Semaphorins and Integrins
    pfam01437
    Location:470 → 515
    PSI; Plexin repeat
    pfam08337
    Location:1272 → 1806
    Plexin_cytopl; Plexin cytoplasmic RasGAP domain
    cl15674
    Location:807 → 898
    IPT; Immunoglobulin-like fold, Plexins, Transcription factors (IPT). IPTs are also known as Transcription factor ImmunoGlobin (TIG) domains. They are present in intracellular transcription factors, cell surface receptors (such as plexins and scatter factor ...
    cl15693
    Location:26 → 469
    Sema; The Sema domain, a protein interacting module, of semaphorins and plexins

  2. XM_059725915.1 → XP_059581898.1  plexin-B2

  3. XM_019491747.2 → XP_019347292.1  plexin-B2

    UniProtKB/TrEMBL
    A0A151PEI4

  4. XM_014601043.3 → XP_014456529.1  plexin-B2

    UniProtKB/TrEMBL
    A0A151PEI4
    Conserved Domains (5) summary
    smart00423
    Location:758 → 805
    PSI; domain found in Plexins, Semaphorins and Integrins
    pfam01437
    Location:470 → 515
    PSI; Plexin repeat
    pfam08337
    Location:1272 → 1806
    Plexin_cytopl; Plexin cytoplasmic RasGAP domain
    cl15674
    Location:807 → 898
    IPT; Immunoglobulin-like fold, Plexins, Transcription factors (IPT). IPTs are also known as Transcription factor ImmunoGlobin (TIG) domains. They are present in intracellular transcription factors, cell surface receptors (such as plexins and scatter factor ...
    cl15693
    Location:26 → 469
    Sema; The Sema domain, a protein interacting module, of semaphorins and plexins

  5. XM_059725914.1 → XP_059581897.1  plexin-B2

  6. XM_059725913.1 → XP_059581896.1  plexin-B2

  7. XM_019491742.2 → XP_019347287.1  plexin-B2

    UniProtKB/TrEMBL
    A0A151PEI4
Nucleotide Protein
Heading Accession and Version

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