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TRPM4 transient receptor potential cation channel subfamily M member 4 [ Alligator mississippiensis (American alligator) ]

Gene ID: 102568344, updated on 10-Mar-2024

Summary

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Gene symbol
TRPM4
Gene description
transient receptor potential cation channel subfamily M member 4
Locus tag
Y1Q_0004892
Gene type
protein coding
RefSeq status
MODEL
Organism
Alligator mississippiensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae; Alligator
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 5
Exon count:
25
Annotation release Status Assembly Chr Location
RS_2023_09 current rAllMis1 (GCF_030867095.1) 5 NC_081828.1 (39813822..39832660, complement)
102 previous assembly ASM28112v4 (GCF_000281125.3) Unplaced Scaffold NW_017710236.1 (81..11677)

Chromosome 5 - NC_081828.1Genomic Context describing neighboring genes Neighboring gene RuvB like AAA ATPase 2 Neighboring gene polynucleotide kinase 3'-phosphatase Neighboring gene histidine rich calcium binding protein Neighboring gene PTPRF interacting protein alpha 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium-activated cation channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ligand-gated calcium channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in calcium ion transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transient receptor potential cation channel subfamily M member 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030867095.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rAllMis1 Primary Assembly

Genomic

  1. NC_081828.1 Reference rAllMis1 Primary Assembly

    Range
    39813822..39832660 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_059728179.1 → XP_059584162.1  transient receptor potential cation channel subfamily M member 4 isoform X3

  2. XM_059728177.1 → XP_059584160.1  transient receptor potential cation channel subfamily M member 4 isoform X1

  3. XM_059728178.1 → XP_059584161.1  transient receptor potential cation channel subfamily M member 4 isoform X2

Nucleotide Protein
Heading Accession and Version

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