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ALKBH2 alkB homolog 2, alpha-ketoglutarate dependent dioxygenase [ Alligator mississippiensis (American alligator) ]

Gene ID: 102565511, updated on 10-Mar-2024

Summary

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Gene symbol
ALKBH2
Gene description
alkB homolog 2, alpha-ketoglutarate dependent dioxygenase
Locus tag
Y1Q_0018712
Gene type
protein coding
RefSeq status
MODEL
Organism
Alligator mississippiensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae; Alligator
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 10
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_09 current rAllMis1 (GCF_030867095.1) 10 NC_081833.1 (4887225..4891062, complement)
102 previous assembly ASM28112v4 (GCF_000281125.3) Unplaced Scaffold NW_017709599.1 (10329401..10332449)

Chromosome 10 - NC_081833.1Genomic Context describing neighboring genes Neighboring gene SV2 related protein Neighboring gene ubiquitin specific peptidase 30 Neighboring gene uracil DNA glycosylase Neighboring gene acetyl-CoA carboxylase beta

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in DNA repair IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DNA oxidative demethylase ALKBH2
Names
alkB, alkylation repair homolog 2
alkB, alkylation repair-like protein 2
alpha-ketoglutarate-dependent dioxygenase alkB-like protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030867095.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rAllMis1 Primary Assembly

Genomic

  1. NC_081833.1 Reference rAllMis1 Primary Assembly

    Range
    4887225..4891062 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019486766.2 → XP_019342311.1  DNA oxidative demethylase ALKBH2 isoform X1

  2. XM_014598421.3 → XP_014453907.1  DNA oxidative demethylase ALKBH2 isoform X2

    Conserved Domains (1) summary
    pfam13532
    Location:74 → 256
    2OG-FeII_Oxy_2; 2OG-Fe(II) oxygenase superfamily
Nucleotide Protein
Heading Accession and Version

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