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HLCS holocarboxylase synthetase [ Alligator mississippiensis (American alligator) ]

Gene ID: 102565173, updated on 10-Mar-2024

Summary

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Gene symbol
HLCS
Gene description
holocarboxylase synthetase
Locus tag
Y1Q_0003299
Gene type
protein coding
RefSeq status
MODEL
Organism
Alligator mississippiensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae; Alligator
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 1
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2023_09 current rAllMis1 (GCF_030867095.1) 1 NC_081824.1 (294807028..295005514, complement)
102 previous assembly ASM28112v4 (GCF_000281125.3) Unplaced Scaffold NW_017713645.1 (51433124..51623737, complement)

Chromosome 1 - NC_081824.1Genomic Context describing neighboring genes Neighboring gene claudin 14 Neighboring gene SIM bHLH transcription factor 2 Neighboring gene ripply transcriptional repressor 3 Neighboring gene phosphatidylinositol glycan anchor biosynthesis class P

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables biotin-[acetyl-CoA-carboxylase] ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein modification process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
biotin--protein ligase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030867095.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rAllMis1 Primary Assembly

Genomic

  1. NC_081824.1 Reference rAllMis1 Primary Assembly

    Range
    294807028..295005514 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019476279.2 → XP_019331824.1  biotin--protein ligase isoform X1

  2. XM_014599149.3 → XP_014454635.2  biotin--protein ligase isoform X2

    UniProtKB/TrEMBL
    A0A151MEK2

  3. XM_019476278.1 → XP_019331823.1  biotin--protein ligase isoform X1

  4. XM_059720737.1 → XP_059576720.1  biotin--protein ligase isoform X1

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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