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    glyA serine hydroxymethyltransferase [ Shigella flexneri 2a str. 301 ]

    Gene ID: 1025638, updated on 11-May-2013
    Gene symbol
    glyA
    Gene description
    serine hydroxymethyltransferase
    Locus tag
    SF2598
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Shigella flexneri 2a str. 301 (strain: 301, serotype: 2a)
    Lineage
    Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Shigella
    Sequence :
    NC_004337.2 (2669125..2670378, complement)

    NC_004337.2Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene NAGC-like transcriptional regulator Neighboring gene bifunctional nitric oxide dioxygenase/dihydropteridine reductase 2 Neighboring gene nitrogen regulatory protein P-II 1

    Go to nucleotideGraphics FASTA GenBank

    Go to reference sequence details

    Related articles in PubMed

    1. Genome sequence of Shigella flexneri 2a: insights into pathogenicity through comparison with genomes of Escherichia coli K12 and O157. Jin Q, et al. Nucleic Acids Res, 2002 Oct 15. PMID 12384590.

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Submit: New GeneRIF Correction
    Names
    serine hydroxymethyltransferase
    NP_708388.2
    • Code: E; COG: COG0112

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_004337.2

      Range
      2669125..2670378, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_708388.2 serine hydroxymethyltransferase [Shigella flexneri 2a str. 301]

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      P0A827
      Conserved Domains (2) summary
      cd00378
      Location:9 – 409
      Blast Score: 1636
      SHMT; Serine-glycine hydroxymethyltransferase (SHMT). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl ...
      PRK00011
      Location:6 – 417
      Blast Score: 2067
      glyA; serine hydroxymethyltransferase; Reviewed
    Nucleotide Protein
    Heading Accession and Version
    genomic AE005674.2 AAN44095.2

    Gene LinkOut

      Supplemental Content

      Table of contents

      Related information

      • BioProjects
        BioProjects related to a gene
      • BioSystems
        BioSystems
      • Conserved Domains
        Conserved Domain Database Links between Entrez Gene and Conserved Domain Database (CDD) are calculated from the domains annotated by the CDD group on Reference Sequence proteins.
      • Full text in PMC
        PMC links
      • Full text in PMC_nucleotide
        Full text in PubMedCentral identified from shared sequence links
      • Genome
        Genome records having the gene annotated on corresponding genomic reference sequence.
      • Nucleotide
        Link to related Nucleotide entry
      • Protein
        Link to related protein entry
      • Protein Clusters
        Related Protein Clusters
      • PubMed
        Links between Gene and PubMed are the result of the following: 1. Manual curation within NCBI. Part of the process of generating a REVIEWED RefSeq is an analysis of the current literature. Papers that are seminal in defining the gene, its sequence, and its function are added to the record at that time. Alert users point out gaps or errors in papers associated with a Gene record. These messages are reviewed and implemented as required. 2. Integration of information from other public databases. Gene integrates gene-citation from resources external to NCBI such as model organism-specific databases, Gene Ontology (GO), groups curating interactions, and sequence databases. The assumption in using these source is that they report citations specific to a gene in a known species. Gene does not process citations from OMIM automatically, because many of citations in OMIM refer to studies of genes in species other than human.
      • PubMed(nucleotide/PMC)
        Citations in PubMed identified from shared sequence and PMC links.
      • RefSeq Proteins
        Link to Protein RefSeqs
      • Taxonomy
        Link to related taxonomy entry

      Links to other resources

      General information

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