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TSNAX translin associated factor X [ Alligator mississippiensis (American alligator) ]

Gene ID: 102563774, updated on 10-Mar-2024

Summary

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Gene symbol
TSNAX
Gene description
translin associated factor X
Locus tag
Y1Q_0009220
Gene type
protein coding
RefSeq status
MODEL
Organism
Alligator mississippiensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae; Alligator
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 1
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2023_09 current rAllMis1 (GCF_030867095.1) 1 NC_081824.1 (149875440..149916003)
102 previous assembly ASM28112v4 (GCF_000281125.3) Unplaced Scaffold NW_017714194.1 (16455588..16496252)

Chromosome 1 - NC_081824.1Genomic Context describing neighboring genes Neighboring gene SprT-like N-terminal domain Neighboring gene egl-9 family hypoxia inducible factor 1 Neighboring gene DISC1 scaffold protein Neighboring gene uncharacterized LOC102564456 Neighboring gene signal induced proliferation associated 1 like 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA endonuclease activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
translin-associated protein X

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030867095.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rAllMis1 Primary Assembly

Genomic

  1. NC_081824.1 Reference rAllMis1 Primary Assembly

    Range
    149875440..149916003
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006274499.4 → XP_006274561.1  translin-associated protein X isoform X1

    See identical proteins and their annotated locations for XP_006274561.1

    UniProtKB/TrEMBL
    A0A151M2T4
    Conserved Domains (1) summary
    pfam01997
    Location:52 → 265
    Translin; Translin family

  2. XM_059715405.1 → XP_059571388.1  translin-associated protein X isoform X2

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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