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PPID peptidylprolyl isomerase D [ Alligator mississippiensis (American alligator) ]

Gene ID: 102562702, updated on 10-Mar-2024

Summary

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Gene symbol
PPID
Gene description
peptidylprolyl isomerase D
Locus tag
Y1Q_0021797
Gene type
protein coding
RefSeq status
MODEL
Organism
Alligator mississippiensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae; Alligator
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 2
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2023_09 current rAllMis1 (GCF_030867095.1) 2 NC_081825.1 (91245180..91269660)
102 previous assembly ASM28112v4 (GCF_000281125.3) Unplaced Scaffold NW_017707947.1 (74046300..74070808)

Chromosome 2 - NC_081825.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC132248572 Neighboring gene sperm microtubule inner protein 2 Neighboring gene folliculin interacting protein 2 Neighboring gene electron transfer flavoprotein dehydrogenase Neighboring gene relaxin family peptide receptor 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables peptidyl-prolyl cis-trans isomerase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein folding IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein peptidyl-prolyl isomerization IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
peptidyl-prolyl cis-trans isomerase D

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030867095.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rAllMis1 Primary Assembly

Genomic

  1. NC_081825.1 Reference rAllMis1 Primary Assembly

    Range
    91245180..91269660
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_059721937.1 → XP_059577920.1  peptidyl-prolyl cis-trans isomerase D isoform X2

  2. XM_006261450.4 → XP_006261512.2  peptidyl-prolyl cis-trans isomerase D isoform X1

    UniProtKB/TrEMBL
    A0A151PAZ0
    Conserved Domains (4) summary
    cd01926
    Location:16 → 182
    cyclophilin_ABH_like; cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain. This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which ...
    sd00006
    Location:223 → 251
    TPR; TPR repeat [structural motif]
    pfam00515
    Location:308 → 340
    TPR_1; Tetratricopeptide repeat
    pfam13414
    Location:277 → 338
    TPR_11; TPR repeat

RNA

  1. XR_009459810.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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