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RPS3 ribosomal protein S3 [ Alligator mississippiensis (American alligator) ]

Gene ID: 102560988, updated on 10-Mar-2024

Summary

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Gene symbol
RPS3
Gene description
ribosomal protein S3
Locus tag
Y1Q_0001105
Gene type
protein coding
RefSeq status
MODEL
Organism
Alligator mississippiensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae; Alligator
Orthologs
human mouse all
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Genomic context

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See RPS3 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2023_09 current rAllMis1 (GCF_030867095.1) 1 NC_081824.1 (468421799..468431461)
102 previous assembly ASM28112v4 (GCF_000281125.3) Unplaced Scaffold NW_017714086.1 (4148..13808)

Chromosome 1 - NC_081824.1Genomic Context describing neighboring genes Neighboring gene U1 spliceosomal RNA Neighboring gene U1 spliceosomal RNA Neighboring gene small nucleolar RNA SNORD15 Neighboring gene small nucleolar RNA SNORD15 Neighboring gene small nucleolar RNA SNORD15 Neighboring gene serpin family H member 1 Neighboring gene uncharacterized LOC106739383 Neighboring gene uncharacterized LOC109281108 Neighboring gene uncharacterized LOC132248675

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of apoptotic signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in translation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of cytosolic small ribosomal subunit IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
small ribosomal subunit protein uS3
Names
40S ribosomal protein S3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030867095.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rAllMis1 Primary Assembly

Genomic

  1. NC_081824.1 Reference rAllMis1 Primary Assembly

    Range
    468421799..468431461
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006260561.4 → XP_006260623.1  small ribosomal subunit protein uS3

    See identical proteins and their annotated locations for XP_006260623.1

    Conserved Domains (3) summary
    cd02413
    Location:15 → 95
    40S_S3_KH; K homology RNA-binding (KH) domain of the eukaryotic 40S small ribosomal subunit protein S3. S3 is part of the head region of the 40S ribosomal subunit and is believed to interact with mRNA as it threads its way from the latch into the channel. The KH ...
    PTZ00084
    Location:4 → 216
    PTZ00084; 40S ribosomal protein S3; Provisional
    pfam00189
    Location:105 → 186
    Ribosomal_S3_C; Ribosomal protein S3, C-terminal domain
Nucleotide Protein
Heading Accession and Version

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