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SFPQ splicing factor proline and glutamine rich [ Alligator mississippiensis (American alligator) ]

Gene ID: 102560404, updated on 10-Mar-2024

Summary

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Gene symbol
SFPQ
Gene description
splicing factor proline and glutamine rich
Locus tag
Y1Q_0001871
Gene type
protein coding
RefSeq status
MODEL
Organism
Alligator mississippiensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae; Alligator
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 6
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2023_09 current rAllMis1 (GCF_030867095.1) 6 NC_081829.1 (8374916..8390014, complement)
102 previous assembly ASM28112v4 (GCF_000281125.3) Unplaced Scaffold NW_017707671.1 (2010398..2025360, complement)

Chromosome 6 - NC_081829.1Genomic Context describing neighboring genes Neighboring gene platelet-activating factor receptor Neighboring gene transmembrane protein 35B Neighboring gene uncharacterized LOC109283327 Neighboring gene zinc finger MYM-type containing 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
splicing factor, proline- and glutamine-rich

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030867095.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rAllMis1 Primary Assembly

Genomic

  1. NC_081829.1 Reference rAllMis1 Primary Assembly

    Range
    8374916..8390014 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_059729602.1 → XP_059585585.1  splicing factor, proline- and glutamine-rich isoform X2

  2. XM_059729601.1 → XP_059585584.1  splicing factor, proline- and glutamine-rich isoform X2

  3. XM_059729600.1 → XP_059585583.1  splicing factor, proline- and glutamine-rich isoform X1

  4. XM_059729598.1 → XP_059585581.1  splicing factor, proline- and glutamine-rich isoform X1

Nucleotide Protein
Heading Accession and Version

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