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ATP9A ATPase phospholipid transporting 9A (putative) [ Alligator mississippiensis (American alligator) ]

Gene ID: 102559524, updated on 10-Mar-2024

Summary

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Gene symbol
ATP9A
Gene description
ATPase phospholipid transporting 9A (putative)
Locus tag
Y1Q_0002729
Gene type
protein coding
RefSeq status
MODEL
Organism
Alligator mississippiensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae; Alligator
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 9
Exon count:
28
Annotation release Status Assembly Chr Location
RS_2023_09 current rAllMis1 (GCF_030867095.1) 9 NC_081832.1 (12103005..12197409)
102 previous assembly ASM28112v4 (GCF_000281125.3) Unplaced Scaffold NW_017708899.1 (8524916..8619704)

Chromosome 9 - NC_081832.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC109282427 Neighboring gene uncharacterized LOC132252420 Neighboring gene spalt like transcription factor 4 Neighboring gene nuclear factor of activated T cells 2 Neighboring gene potassium voltage-gated channel modifier subfamily G member 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATPase-coupled intramembrane lipid transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables magnesium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in endocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in phospholipid translocation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in trans-Golgi network IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable phospholipid-transporting ATPase IIA
Names
ATPase, class II, type 9B
putative phospholipid-transporting ATPase IIB

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030867095.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rAllMis1 Primary Assembly

Genomic

  1. NC_081832.1 Reference rAllMis1 Primary Assembly

    Range
    12103005..12197409
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014609691.3 → XP_014465177.1  probable phospholipid-transporting ATPase IIA

    UniProtKB/TrEMBL
    A0A151NYY0
    Conserved Domains (6) summary
    cd01427
    Location:652 → 802
    HAD_like; Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, ...
    TIGR01652
    Location:53 → 1045
    ATPase-Plipid; phospholipid-translocating P-type ATPase, flippase
    pfam00122
    Location:109 → 337
    E1-E2_ATPase; E1-E2 ATPase
    pfam13246
    Location:499 → 573
    Cation_ATPase; Cation transport ATPase (P-type)
    pfam16209
    Location:40 → 104
    PhoLip_ATPase_N; Phospholipid-translocating ATPase N-terminal
    pfam16212
    Location:811 → 1039
    PhoLip_ATPase_C; Phospholipid-translocating P-type ATPase C-terminal
Nucleotide Protein
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