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SAP18 Sin3A associated protein 18 [ Vicugna pacos (alpaca) ]

Gene ID: 102545105, updated on 10-Mar-2024

Summary

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Gene symbol
SAP18
Gene description
Sin3A associated protein 18
Gene type
protein coding
RefSeq status
MODEL
Organism
Vicugna pacos
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Tylopoda; Camelidae; Vicugna
Annotation information
Annotation category: partial on reference assembly
Orthologs
human mouse all
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Genomic context

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See SAP18 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
3
Annotation release Status Assembly Chr Location
102 current VicPac3.1 (GCF_000164845.3) 14 Unlocalized Scaffold NW_021964184.1 (29998582..30004134, complement)
101 previous assembly Vicugna_pacos-2.0.1 (GCF_000164845.1) Unplaced Scaffold NW_005882946.1 (1602487..1607165, complement)

NW_021964184.1Genomic Context describing neighboring genes Neighboring gene zinc finger DHHC-type palmitoyltransferase 20 Neighboring gene translation initiation factor IF-2 Neighboring gene spindle and kinetochore associated complex subunit 3 Neighboring gene uncharacterized LOC116283370 Neighboring gene large tumor suppressor kinase 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables transcription corepressor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription factor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: histone deacetylase complex subunit SAP18
Names
Sin3A-associated protein, 18kDa

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Vicugna pacos Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference VicPac3.1 Primary Assembly

Genomic

  1. NW_021964184.1 Reference VicPac3.1 Primary Assembly

    Range
    29998582..30004134 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015249504.2 → XP_015104990.2  LOW QUALITY PROTEIN: histone deacetylase complex subunit SAP18

    UniProtKB/TrEMBL
    A0A6J0AZT7
    Conserved Domains (1) summary
    pfam06487
    Location:1 → 112
    SAP18; Sin3 associated polypeptide p18 (SAP18)
Nucleotide Protein
Heading Accession and Version

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