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TSHZ1 teashirt zinc finger homeobox 1 [ Vicugna pacos (alpaca) ]

Gene ID: 102544539, updated on 10-Mar-2024

Summary

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Gene symbol
TSHZ1
Gene description
teashirt zinc finger homeobox 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Vicugna pacos
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Tylopoda; Camelidae; Vicugna
Orthologs
human mouse all
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Genomic context

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See TSHZ1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
3
Annotation release Status Assembly Chr Location
102 current VicPac3.1 (GCF_000164845.3) Unplaced Scaffold NW_021972552.1 (1352942..1359845)
101 previous assembly Vicugna_pacos-2.0.1 (GCF_000164845.1) Unplaced Scaffold NW_005882871.1 (2712534..2719426, complement)

NW_021972552.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC116277728 Neighboring gene prostaglandin reductase 3 Neighboring gene uncharacterized LOC116277729 Neighboring gene uncharacterized LOC116277731 Neighboring gene uncharacterized LOC116277730

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: teashirt homolog 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Vicugna pacos Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference VicPac3.1 Primary Assembly

Genomic

  1. NW_021972552.1 Reference VicPac3.1 Primary Assembly

    Range
    1352942..1359845
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006213217.3 → XP_006213279.3  LOW QUALITY PROTEIN: teashirt homolog 1

    UniProtKB/TrEMBL
    A0A6I9IJ11
    Conserved Domains (3) summary
    cd00086
    Location:926 → 994
    homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
    sd00020
    Location:275 → 297
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam12756
    Location:1010 → 1100
    zf-C2H2_2; C2H2 type zinc-finger (2 copies)
Nucleotide Protein
Heading Accession and Version

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