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CLEC16A C-type lectin domain containing 16A [ Vicugna pacos (alpaca) ]

Gene ID: 102544404, updated on 10-Mar-2024

Summary

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Gene symbol
CLEC16A
Gene description
C-type lectin domain containing 16A
Gene type
protein coding
RefSeq status
MODEL
Organism
Vicugna pacos
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Tylopoda; Camelidae; Vicugna
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 18
Exon count:
24
Annotation release Status Assembly Chr Location
102 current VicPac3.1 (GCF_000164845.3) 18 Unlocalized Scaffold NW_021964194.1 (9194844..9392200)
101 previous assembly Vicugna_pacos-2.0.1 (GCF_000164845.1) Unplaced Scaffold NW_005882745.1 (2722599..2917896, complement)

NW_021964194.1Genomic Context describing neighboring genes Neighboring gene class II major histocompatibility complex transactivator Neighboring gene serine/arginine repetitive matrix protein 1-like Neighboring gene Dexi homolog Neighboring gene suppressor of cytokine signaling 1 Neighboring gene transition protein 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in endosomal transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endosome to lysosome transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of autophagosome maturation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endolysosome membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in late endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: protein CLEC16A
Names
C-type lectin domain family 16 member A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Vicugna pacos Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference VicPac3.1 Primary Assembly

Genomic

  1. NW_021964194.1 Reference VicPac3.1 Primary Assembly

    Range
    9194844..9392200
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015239127.2 → XP_015094613.1  LOW QUALITY PROTEIN: protein CLEC16A

    UniProtKB/TrEMBL
    A0A6J0AHV6
    Conserved Domains (1) summary
    pfam09758
    Location:51 → 198
    FPL; Uncharacterized conserved protein
Nucleotide Protein
Heading Accession and Version

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