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TRIM71 tripartite motif containing 71 [ Vicugna pacos (alpaca) ]

Gene ID: 102543190, updated on 10-Mar-2024

Summary

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Gene symbol
TRIM71
Gene description
tripartite motif containing 71
Gene type
protein coding
RefSeq status
MODEL
Organism
Vicugna pacos
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Tylopoda; Camelidae; Vicugna
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 17
Exon count:
5
Annotation release Status Assembly Chr Location
102 current VicPac3.1 (GCF_000164845.3) 17 Unlocalized Scaffold NW_021964193.1 (44334231..44361829)
101 previous assembly Vicugna_pacos-2.0.1 (GCF_000164845.1) Unplaced Scaffold NW_005882725.1 (3578416..3600728, complement)

NW_021964193.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC116284027 Neighboring gene CCR4-NOT transcription complex subunit 10 Neighboring gene CKLF like MARVEL transmembrane domain containing 6 Neighboring gene uncharacterized LOC116284028 Neighboring gene CKLF like MARVEL transmembrane domain containing 7

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proteasome-mediated ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein polyubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
E3 ubiquitin-protein ligase TRIM71

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Vicugna pacos Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference VicPac3.1 Primary Assembly

Genomic

  1. NW_021964193.1 Reference VicPac3.1 Primary Assembly

    Range
    44334231..44361829
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006200755.3 → XP_006200817.1  E3 ubiquitin-protein ligase TRIM71

    UniProtKB/TrEMBL
    A0A6I9I033
    Conserved Domains (5) summary
    smart00502
    Location:80 → 210
    BBC; B-Box C-terminal domain
    cd14954
    Location:350 → 634
    NHL_TRIM71_like; NHL repeat domain of the tripartite motif-containing protein 71 (TRIM71) and related proteins
    sd00039
    Location:470 → 506
    7WD40; WD40 repeat [structural motif]
    pfam00630
    Location:248 → 341
    Filamin; Filamin/ABP280 repeat
    cd19796
    Location:51 → 88
    Bbox2_TRIM71_C-VII; B-box-type 2 zinc finger found in tripartite motif-containing protein 71 (TRIM71) and similar proteins
Nucleotide Protein
Heading Accession and Version

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