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TNFRSF11A TNF receptor superfamily member 11a [ Vicugna pacos (alpaca) ]

Gene ID: 102538597, updated on 10-Mar-2024

Summary

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Gene symbol
TNFRSF11A
Gene description
TNF receptor superfamily member 11a
Gene type
protein coding
RefSeq status
MODEL
Organism
Vicugna pacos
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Tylopoda; Camelidae; Vicugna
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 30
Exon count:
13
Annotation release Status Assembly Chr Location
102 current VicPac3.1 (GCF_000164845.3) 30 Unlocalized Scaffold NW_021964217.1 (982604..1039339, complement)
101 previous assembly Vicugna_pacos-2.0.1 (GCF_000164845.1) Unplaced Scaffold NW_005882756.1 (910689..972246, complement)

NW_021964217.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC116286074 Neighboring gene zinc finger CCHC-type containing 2 Neighboring gene RAB11 binding and LisH domain, coiled-coil and HEAT repeat containing Neighboring gene phosphatidylinositol glycan anchor biosynthesis class N

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cytokine binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables tumor necrosis factor receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in lymph node development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mammary gland alveolus development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in multinuclear osteoclast differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ossification IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of NF-kappaB transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of bone resorption IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in response to interleukin-1 IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in external side of plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tumor necrosis factor receptor superfamily member 11A
Names
tumor necrosis factor receptor superfamily, member 11a, NFKB activator

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Vicugna pacos Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference VicPac3.1 Primary Assembly

Genomic

  1. NW_021964217.1 Reference VicPac3.1 Primary Assembly

    Range
    982604..1039339 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031692412.1 → XP_031548272.1  tumor necrosis factor receptor superfamily member 11A

    UniProtKB/TrEMBL
    A0A6J3BS59
    Conserved Domains (2) summary
    cd00185
    Location:79 → 119
    TNFRSF; CRD4 [structural motif]
    cl22855
    Location:68 → 120
    TNFRSF; Tumor necrosis factor receptor superfamily (TNFRSF)
Nucleotide Protein
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