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PSAP prosaposin [ Vicugna pacos (alpaca) ]

Gene ID: 102533945, updated on 10-Mar-2024

Summary

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Gene symbol
PSAP
Gene description
prosaposin
Gene type
protein coding
RefSeq status
MODEL
Organism
Vicugna pacos
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Tylopoda; Camelidae; Vicugna
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 11
Exon count:
15
Annotation release Status Assembly Chr Location
102 current VicPac3.1 (GCF_000164845.3) 11 Unlocalized Scaffold NW_021964175.1 (4851276..4879294, complement)
101 previous assembly Vicugna_pacos-2.0.1 (GCF_000164845.1) Unplaced Scaffold NW_005882862.1 (759065..787056)

NW_021964175.1Genomic Context describing neighboring genes Neighboring gene cadherin related 23 Neighboring gene chromosome 11 C10orf105 homolog Neighboring gene V-set immunoregulatory receptor Neighboring gene transfer RNA valine (anticodon AAC) Neighboring gene transfer RNA valine (anticodon GAC) Neighboring gene carbohydrate sulfotransferase 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in sphingolipid metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in lysosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
prosaposin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Vicugna pacos Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference VicPac3.1 Primary Assembly

Genomic

  1. NW_021964175.1 Reference VicPac3.1 Primary Assembly

    Range
    4851276..4879294 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015246656.2 → XP_015102142.1  prosaposin isoform X3

    UniProtKB/TrEMBL
    A0A6J0AVL9
    Conserved Domains (3) summary
    smart00741
    Location:408 → 482
    SapB; Saposin (B) Domains
    pfam02199
    Location:493 → 523
    SapA; Saposin A-type domain
    cl02494
    Location:21 → 54
    SapA; Saposin A-type domain

  2. XM_015246655.2 → XP_015102141.1  prosaposin isoform X2

    UniProtKB/TrEMBL
    A0A6J0AV98
    Conserved Domains (3) summary
    smart00741
    Location:410 → 484
    SapB; Saposin (B) Domains
    pfam02199
    Location:495 → 525
    SapA; Saposin A-type domain
    cl02494
    Location:21 → 54
    SapA; Saposin A-type domain

  3. XM_006212866.3 → XP_006212928.2  prosaposin isoform X1

    UniProtKB/TrEMBL
    A0A6I9II56
    Conserved Domains (3) summary
    smart00741
    Location:411 → 485
    SapB; Saposin (B) Domains
    pfam02199
    Location:496 → 526
    SapA; Saposin A-type domain
    cl02494
    Location:21 → 54
    SapA; Saposin A-type domain
Nucleotide Protein
Heading Accession and Version

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