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EMG1 EMG1 N1-specific pseudouridine methyltransferase [ Vicugna pacos (alpaca) ]

Gene ID: 102533764, updated on 10-Mar-2024

Summary

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Gene symbol
EMG1
Gene description
EMG1 N1-specific pseudouridine methyltransferase
Gene type
protein coding
RefSeq status
MODEL
Organism
Vicugna pacos
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Tylopoda; Camelidae; Vicugna
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 34
Exon count:
6
Annotation release Status Assembly Chr Location
102 current VicPac3.1 (GCF_000164845.3) 34 Unlocalized Scaffold NW_021964223.1 (16942230..16947047, complement)
101 previous assembly Vicugna_pacos-2.0.1 (GCF_000164845.1) Unplaced Scaffold NW_005882819.1 (5163296..5168118)

NW_021964223.1Genomic Context describing neighboring genes Neighboring gene nucleolar protein 56 pseudogene Neighboring gene lysophosphatidylcholine acyltransferase 3 Neighboring gene small nucleolar RNA U89 Neighboring gene prohibitin 2 Neighboring gene protein tyrosine phosphatase non-receptor type 6

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables rRNA (pseudouridine) methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables rRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in rRNA base methylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of small-subunit processome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ribosomal RNA small subunit methyltransferase NEP1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Vicugna pacos Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference VicPac3.1 Primary Assembly

Genomic

  1. NW_021964223.1 Reference VicPac3.1 Primary Assembly

    Range
    16942230..16947047 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006210885.2 → XP_006210947.1  ribosomal RNA small subunit methyltransferase NEP1 isoform X1

    UniProtKB/TrEMBL
    A0A6I9IEN5
    Conserved Domains (1) summary
    cd18088
    Location:43 → 238
    Nep1-like; 18S rRNA (pseudouridine(1248)-N1)-methyltransferase Nep1

  2. XM_031670710.1 → XP_031526570.1  ribosomal RNA small subunit methyltransferase NEP1 isoform X2

    UniProtKB/TrEMBL
    A0A6J2ZXC3
    Conserved Domains (1) summary
    cd18088
    Location:43 → 188
    Nep1-like; 18S rRNA (pseudouridine(1248)-N1)-methyltransferase Nep1
Nucleotide Protein
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