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ZNF484 zinc finger protein 484 [ Vicugna pacos (alpaca) ]

Gene ID: 102532865, updated on 10-Mar-2024

Summary

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Gene symbol
ZNF484
Gene description
zinc finger protein 484
Gene type
protein coding
RefSeq status
MODEL
Organism
Vicugna pacos
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Tylopoda; Camelidae; Vicugna
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
102 current VicPac3.1 (GCF_000164845.3) Unplaced Scaffold NW_022040534.1 (75607..96828, complement)
101 previous assembly Vicugna_pacos-2.0.1 (GCF_000164845.1) Unplaced Scaffold NW_005882795.1 (163394..184567, complement)

NW_022040534.1Genomic Context describing neighboring genes Neighboring gene major facilitator superfamily domain containing 14B Neighboring gene transfer RNA proline (anticodon AGG) Neighboring gene U6 spliceosomal RNA Neighboring gene NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 4 pseudogene Neighboring gene isoleucyl-tRNA synthetase 1 Neighboring gene small nucleolar RNA SNORA84

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription repressor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger protein 484

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Vicugna pacos Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference VicPac3.1 Primary Assembly

Genomic

  1. NW_022040534.1 Reference VicPac3.1 Primary Assembly

    Range
    75607..96828 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006209261.3 → XP_006209323.1  zinc finger protein 484 isoform X1

    UniProtKB/TrEMBL
    A0A6I9IFM6
    Conserved Domains (4) summary
    smart00349
    Location:8 → 68
    KRAB; krueppel associated box
    COG5048
    Location:371 → 800
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:700 → 720
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:282 → 301
    ZF_C2H2; C2H2 Zn finger [structural motif]

  2. XM_031676670.1 → XP_031532530.1  zinc finger protein 484 isoform X2

    UniProtKB/TrEMBL
    A0A6J3ADQ7
    Conserved Domains (5) summary
    COG5048
    Location:436 → 781
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:664 → 684
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:246 → 265
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:369 → 393
    zf-H2C2_2; Zinc-finger double domain
    cl02581
    Location:1 → 32
    KRAB_A-box; KRAB (Kruppel-associated box) domain -A box

  3. XM_031676671.1 → XP_031532531.1  zinc finger protein 484 isoform X3

    UniProtKB/TrEMBL
    A0A6J3AIR1
    Conserved Domains (4) summary
    COG5048
    Location:405 → 750
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:633 → 653
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:215 → 234
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:338 → 362
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein
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