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MSR1 macrophage scavenger receptor 1 [ Vicugna pacos (alpaca) ]

Gene ID: 102532478, updated on 10-Mar-2024

Summary

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Gene symbol
MSR1
Gene description
macrophage scavenger receptor 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Vicugna pacos
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Tylopoda; Camelidae; Vicugna
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 26
Exon count:
13
Annotation release Status Assembly Chr Location
102 current VicPac3.1 (GCF_000164845.3) 26 Unlocalized Scaffold NW_021964210.1 (1266097..1329460)
101 previous assembly Vicugna_pacos-2.0.1 (GCF_000164845.1) Unplaced Scaffold NW_005882710.1 (14249781..14313256)

NW_021964210.1Genomic Context describing neighboring genes Neighboring gene transfer RNA proline (anticodon AGG) Neighboring gene uncharacterized LOC116285721 Neighboring gene tumor suppressor candidate 3 Neighboring gene acyl-CoA-binding protein pseudogene Neighboring gene fibronectin type 3 and ankyrin repeat domains 1 protein pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables scavenger receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in receptor-mediated endocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
macrophage scavenger receptor types I and II

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Vicugna pacos Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference VicPac3.1 Primary Assembly

Genomic

  1. NW_021964210.1 Reference VicPac3.1 Primary Assembly

    Range
    1266097..1329460
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015249360.2 → XP_015104846.1  macrophage scavenger receptor types I and II isoform X1

    UniProtKB/TrEMBL
    A0A6J0B1D0
    Conserved Domains (3) summary
    pfam01391
    Location:305 → 334
    Collagen; Collagen triple helix repeat (20 copies)
    smart00202
    Location:350 → 450
    SR; Scavenger receptor Cys-rich
    pfam03523
    Location:121 → 169
    Macscav_rec; Macrophage scavenger receptor

  2. XM_015249367.2 → XP_015104853.1  macrophage scavenger receptor types I and II isoform X2

    UniProtKB/TrEMBL
    A0A6J0AZM6
    Conserved Domains (2) summary
    pfam01391
    Location:305 → 334
    Collagen; Collagen triple helix repeat (20 copies)
    pfam03523
    Location:121 → 169
    Macscav_rec; Macrophage scavenger receptor

  3. XM_006198033.3 → XP_006198095.1  macrophage scavenger receptor types I and II isoform X1

    UniProtKB/TrEMBL
    A0A6J0B1D0
    Conserved Domains (3) summary
    pfam01391
    Location:305 → 334
    Collagen; Collagen triple helix repeat (20 copies)
    smart00202
    Location:350 → 450
    SR; Scavenger receptor Cys-rich
    pfam03523
    Location:121 → 169
    Macscav_rec; Macrophage scavenger receptor

  4. XM_031691471.1 → XP_031547331.1  macrophage scavenger receptor types I and II isoform X1

    UniProtKB/TrEMBL
    A0A6J0B1D0
    Conserved Domains (3) summary
    pfam01391
    Location:305 → 334
    Collagen; Collagen triple helix repeat (20 copies)
    smart00202
    Location:350 → 450
    SR; Scavenger receptor Cys-rich
    pfam03523
    Location:121 → 169
    Macscav_rec; Macrophage scavenger receptor
Nucleotide Protein
Heading Accession and Version

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