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PCDH20 protocadherin 20 [ Vicugna pacos (alpaca) ]

Gene ID: 102531599, updated on 10-Mar-2024

Summary

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Gene symbol
PCDH20
Gene description
protocadherin 20
Gene type
protein coding
RefSeq status
MODEL
Organism
Vicugna pacos
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Tylopoda; Camelidae; Vicugna
Orthologs
human mouse all
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Genomic context

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See PCDH20 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
2
Annotation release Status Assembly Chr Location
102 current VicPac3.1 (GCF_000164845.3) 14 Unlocalized Scaffold NW_021964184.1 (2020099..2026074)
101 previous assembly Vicugna_pacos-2.0.1 (GCF_000164845.1) Unplaced Scaffold NW_005883115.1 (424591..430318, complement)

NW_021964184.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC116283265 Neighboring gene vasculin pseudogene Neighboring gene uncharacterized LOC116283286 Neighboring gene 60S acidic ribosomal protein P0 pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protocadherin-20

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Vicugna pacos Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference VicPac3.1 Primary Assembly

Genomic

  1. NW_021964184.1 Reference VicPac3.1 Primary Assembly

    Range
    2020099..2026074
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006219029.3 → XP_006219091.1  protocadherin-20

    UniProtKB/TrEMBL
    A0A6I9IUC0
    Conserved Domains (2) summary
    cd11304
    Location:541 → 635
    Cadherin_repeat; Cadherin tandem repeat domain
    pfam08266
    Location:70 → 152
    Cadherin_2; Cadherin-like
Nucleotide Protein
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Gene LinkOut

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