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PTBP2 polypyrimidine tract binding protein 2 [ Vicugna pacos (alpaca) ]

Gene ID: 102531490, updated on 10-Mar-2024

Summary

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Gene symbol
PTBP2
Gene description
polypyrimidine tract binding protein 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Vicugna pacos
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Tylopoda; Camelidae; Vicugna
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 9
Exon count:
14
Annotation release Status Assembly Chr Location
102 current VicPac3.1 (GCF_000164845.3) 9 Unlocalized Scaffold NW_021964169.1 (11877123..11946074, complement)
101 previous assembly Vicugna_pacos-2.0.1 (GCF_000164845.1) Unplaced Scaffold NW_005882706.1 (5547174..5615775)

NW_021964169.1Genomic Context describing neighboring genes Neighboring gene dihydropyrimidine dehydrogenase Neighboring gene transfer RNA serine (anticodon AGA) Neighboring gene U6 spliceosomal RNA Neighboring gene 60S acidic ribosomal protein P0 pseudogene Neighboring gene eukaryotic translation initiation factor 3 subunit L pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of RNA splicing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polypyrimidine tract-binding protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Vicugna pacos Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference VicPac3.1 Primary Assembly

Genomic

  1. NW_021964169.1 Reference VicPac3.1 Primary Assembly

    Range
    11877123..11946074 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031680406.1 → XP_031536266.1  polypyrimidine tract-binding protein 2 isoform X2

    UniProtKB/TrEMBL
    A0A6J3AUM3
    Conserved Domains (1) summary
    TIGR01649
    Location:26 → 520
    hnRNP-L_PTB; hnRNP-L/PTB/hephaestus splicing factor family

  2. XM_006197344.3 → XP_006197406.1  polypyrimidine tract-binding protein 2 isoform X5

    See identical proteins and their annotated locations for XP_006197406.1

    UniProtKB/TrEMBL
    A0A6I9HVQ2
    Conserved Domains (1) summary
    TIGR01649
    Location:26 → 501
    hnRNP-L_PTB; hnRNP-L/PTB/hephaestus splicing factor family

  3. XM_015243754.2 → XP_015099240.1  polypyrimidine tract-binding protein 2 isoform X4

    UniProtKB/TrEMBL
    A0A6J0ASU3
    Conserved Domains (1) summary
    TIGR01649
    Location:26 → 506
    hnRNP-L_PTB; hnRNP-L/PTB/hephaestus splicing factor family

  4. XM_031680407.1 → XP_031536267.1  polypyrimidine tract-binding protein 2 isoform X3

    UniProtKB/TrEMBL
    A0A6J3ASW5
    Conserved Domains (1) summary
    TIGR01649
    Location:26 → 516
    hnRNP-L_PTB; hnRNP-L/PTB/hephaestus splicing factor family

  5. XM_031680404.1 → XP_031536264.1  polypyrimidine tract-binding protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A6J3AR16
    Conserved Domains (1) summary
    TIGR01649
    Location:26 → 521
    hnRNP-L_PTB; hnRNP-L/PTB/hephaestus splicing factor family

  6. XM_015243763.2 → XP_015099249.1  polypyrimidine tract-binding protein 2 isoform X7

    UniProtKB/TrEMBL
    A0A6J0ARI9
    Conserved Domains (1) summary
    TIGR01649
    Location:26 → 500
    hnRNP-L_PTB; hnRNP-L/PTB/hephaestus splicing factor family

  7. XM_015243759.2 → XP_015099245.1  polypyrimidine tract-binding protein 2 isoform X6

    UniProtKB/TrEMBL
    A0A6J0ASU8
    Conserved Domains (1) summary
    TIGR01649
    Location:26 → 505
    hnRNP-L_PTB; hnRNP-L/PTB/hephaestus splicing factor family
Nucleotide Protein
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