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CASS4 Cas scaffold protein family member 4 [ Vicugna pacos (alpaca) ]

Gene ID: 102530928, updated on 11-Apr-2024

Summary

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Gene symbol
CASS4
Gene description
Cas scaffold protein family member 4
Gene type
protein coding
RefSeq status
MODEL
Organism
Vicugna pacos
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Tylopoda; Camelidae; Vicugna
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 19
Exon count:
8
Annotation release Status Assembly Chr Location
102 current VicPac3.1 (GCF_000164845.3) 19 Unlocalized Scaffold NW_021964196.1 (5585835..5621053, complement)
101 previous assembly Vicugna_pacos-2.0.1 (GCF_000164845.1) Unplaced Scaffold NW_005882888.1 (47785..82313)

NW_021964196.1Genomic Context describing neighboring genes Neighboring gene protein FAM209B Neighboring gene replication termination factor 2 Neighboring gene beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase 7 Neighboring gene cleavage stimulation factor subunit 1 Neighboring gene aurora kinase A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell surface receptor protein tyrosine kinase signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cas scaffolding protein family member 4
Names
Cas scaffolding protein family member 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Vicugna pacos Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference VicPac3.1 Primary Assembly

Genomic

  1. NW_021964196.1 Reference VicPac3.1 Primary Assembly

    Range
    5585835..5621053 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031687679.1 → XP_031543539.1  cas scaffolding protein family member 4 isoform X1

    UniProtKB/TrEMBL
    A0A6J3BBG4
    Conserved Domains (4) summary
    cd12000
    Location:14 → 70
    SH3_CASS4; Src homology 3 domain of CAS (Crk-Associated Substrate) scaffolding protein family member 4
    PHA03247
    Location:75 → 391
    PHA03247; large tegument protein UL36; Provisional
    pfam08824
    Location:435 → 590
    Serine_rich; Serine rich protein interaction domain
    pfam12026
    Location:594 → 812
    DUF3513; Domain of unknown function (DUF3513)

  2. XM_031687680.1 → XP_031543540.1  cas scaffolding protein family member 4 isoform X2

    UniProtKB/TrEMBL
    A0A6J3B8Y7
    Conserved Domains (4) summary
    cd12000
    Location:6 → 62
    SH3_CASS4; Src homology 3 domain of CAS (Crk-Associated Substrate) scaffolding protein family member 4
    PHA03247
    Location:67 → 383
    PHA03247; large tegument protein UL36; Provisional
    pfam08824
    Location:427 → 582
    Serine_rich; Serine rich protein interaction domain
    pfam12026
    Location:586 → 804
    DUF3513; Domain of unknown function (DUF3513)
Nucleotide Protein
Heading Accession and Version

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