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SMC4 structural maintenance of chromosomes 4 [ Vicugna pacos (alpaca) ]

Gene ID: 102530071, updated on 10-Mar-2024

Summary

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Gene symbol
SMC4
Gene description
structural maintenance of chromosomes 4
Gene type
protein coding
RefSeq status
MODEL
Organism
Vicugna pacos
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Tylopoda; Camelidae; Vicugna
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 1
Exon count:
24
Annotation release Status Assembly Chr Location
102 current VicPac3.1 (GCF_000164845.3) 1 Unlocalized Scaffold NW_021964154.1 (33938052..33974505)
101 previous assembly Vicugna_pacos-2.0.1 (GCF_000164845.1) Unplaced Scaffold NW_005882726.1 (9818656..9855390, complement)

NW_021964154.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC116281178 Neighboring gene intraflagellar transport 80 Neighboring gene MHC class I polypeptide-related sequence B pseudogene Neighboring gene tripartite motif containing 59 Neighboring gene transfer RNA glycine (anticodon ACC)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mitotic chromosome condensation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in chromosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
structural maintenance of chromosomes protein 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Vicugna pacos Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference VicPac3.1 Primary Assembly

Genomic

  1. NW_021964154.1 Reference VicPac3.1 Primary Assembly

    Range
    33938052..33974505
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031679463.1 → XP_031535323.1  structural maintenance of chromosomes protein 4 isoform X2

    UniProtKB/TrEMBL
    A0A6J3AP24
    Conserved Domains (1) summary
    pfam02463
    Location:83 → 1227
    SMC_N; RecF/RecN/SMC N terminal domain

  2. XM_006200857.3 → XP_006200919.1  structural maintenance of chromosomes protein 4 isoform X1

    See identical proteins and their annotated locations for XP_006200919.1

    UniProtKB/TrEMBL
    A0A6I9I167
    Conserved Domains (1) summary
    pfam02463
    Location:83 → 1274
    SMC_N; RecF/RecN/SMC N terminal domain

  3. XM_006200858.3 → XP_006200920.1  structural maintenance of chromosomes protein 4 isoform X1

    See identical proteins and their annotated locations for XP_006200920.1

    UniProtKB/TrEMBL
    A0A6I9I167
    Conserved Domains (1) summary
    pfam02463
    Location:83 → 1274
    SMC_N; RecF/RecN/SMC N terminal domain

  4. XM_031679469.1 → XP_031535329.1  structural maintenance of chromosomes protein 4 isoform X3

    UniProtKB/TrEMBL
    A0A6J3ANE7
    Conserved Domains (1) summary
    pfam02463
    Location:1 → 1149
    SMC_N; RecF/RecN/SMC N terminal domain
Nucleotide Protein
Heading Accession and Version

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