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SHROOM4 shroom family member 4 [ Vicugna pacos (alpaca) ]

Gene ID: 102527635, updated on 10-Mar-2024

Summary

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Gene symbol
SHROOM4
Gene description
shroom family member 4
Gene type
protein coding
RefSeq status
MODEL
Organism
Vicugna pacos
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Tylopoda; Camelidae; Vicugna
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
102 current VicPac3.1 (GCF_000164845.3) Unplaced Scaffold NW_022024200.1 (740160..939889)
101 previous assembly Vicugna_pacos-2.0.1 (GCF_000164845.1) Unplaced Scaffold NW_005883018.1 (203953..403759)

NW_022024200.1Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene bone morphogenetic protein 15 Neighboring gene small nucleolar RNA SNORA61 Neighboring gene transfer RNA alanine (anticodon AGC) Neighboring gene U6 spliceosomal RNA Neighboring gene transfer RNA valine (anticodon AAC) Neighboring gene diacylglycerol kinase kappa Neighboring gene 60S ribosomal protein L18 pseudogene Neighboring gene U6 spliceosomal RNA

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables actin filament binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in actin filament organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in adherens junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in apical junction complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in apical plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cortical actin cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein Shroom4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Vicugna pacos Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference VicPac3.1 Primary Assembly

Genomic

  1. NW_022024200.1 Reference VicPac3.1 Primary Assembly

    Range
    740160..939889
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006217833.3 → XP_006217895.2  protein Shroom4 isoform X1

    UniProtKB/TrEMBL
    A0A6I9IPP4
    Conserved Domains (3) summary
    PHA03307
    Location:373 → 603
    PHA03307; transcriptional regulator ICP4; Provisional
    cd00992
    Location:13 → 89
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    pfam08687
    Location:1294 → 1517
    ASD2; Apx/Shroom domain ASD2

  2. XM_031673961.1 → XP_031529821.1  protein Shroom4 isoform X2

    UniProtKB/TrEMBL
    A0A6J3AAS4
    Conserved Domains (2) summary
    PHA03307
    Location:257 → 487
    PHA03307; transcriptional regulator ICP4; Provisional
    pfam08687
    Location:1178 → 1401
    ASD2; Apx/Shroom domain ASD2
Nucleotide Protein
Heading Accession and Version

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