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STX5 syntaxin 5 [ Camelus ferus (Wild Bactrian camel) ]

Gene ID: 102522646, updated on 10-Mar-2024

Summary

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Gene symbol
STX5
Gene description
syntaxin 5
Locus tag
CB1_000570017
See related
EnsemblRapid:ENSCFEG00005005375
Gene type
protein coding
RefSeq status
MODEL
Organism
Camelus ferus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Tylopoda; Camelidae; Camelus
Also known as
syntaxin-5
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 10
Exon count:
11
Annotation release Status Assembly Chr Location
102 current BCGSAC_Cfer_1.0 (GCF_009834535.1) 10 NC_045705.1 (63863095..63886084, complement)
101 previous assembly CB1 (GCF_000311805.1) Unplaced Scaffold NW_006210746.1 (202505..225522, complement)

Chromosome 10 - NC_045705.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 223 Neighboring gene nuclear RNA export factor 1 Neighboring gene testis-expressed protein 54-like Neighboring gene uncharacterized LOC116666508 Neighboring gene WD repeat domain 74

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequences of wild and domestic bactrian camels. Bactrian Camels Genome Sequencing and Analysis Consortium, et al. Nat Commun, 2012. PMID 23149746, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables SNAP receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables SNARE binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vesicle docking IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vesicle fusion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of SNARE complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endomembrane system IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
syntaxin-5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Camelus ferus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BCGSAC_Cfer_1.0 Primary Assembly

Genomic

  1. NC_045705.1 Reference BCGSAC_Cfer_1.0 Primary Assembly

    Range
    63863095..63886084 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014556804.2 → XP_014412290.1  syntaxin-5 isoform X3

    UniProtKB/TrEMBL
    A0A8B7KA51
    Conserved Domains (3) summary
    COG5325
    Location:110 → 266
    COG5325; t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
    cd15844
    Location:208 → 280
    SNARE_syntaxin5; SNARE motif of syntaxin 5
    pfam11416
    Location:53 → 74
    Syntaxin-5_N; Syntaxin-5 N-terminal, Sly1p-binding domain

  2. XM_006181783.3 → XP_006181845.1  syntaxin-5 isoform X1

    See identical proteins and their annotated locations for XP_006181845.1

    UniProtKB/TrEMBL
    S9X4R5
    Conserved Domains (3) summary
    COG5325
    Location:182 → 324
    COG5325; t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
    cd15844
    Location:266 → 338
    SNARE_syntaxin5; SNARE motif of syntaxin 5
    pfam11416
    Location:53 → 74
    Syntaxin-5_N; Syntaxin-5 N-terminal, Sly1p-binding domain

  3. XM_006181784.3 → XP_006181846.2  syntaxin-5 isoform X2

    UniProtKB/TrEMBL
    A0A8B6YD51
    Conserved Domains (3) summary
    COG5325
    Location:128 → 270
    COG5325; t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
    cd15844
    Location:212 → 284
    SNARE_syntaxin5; SNARE motif of syntaxin 5
    pfam11416
    Location:1 → 19
    Syntaxin-5_N; Syntaxin-5 N-terminal, Sly1p-binding domain

  4. XM_014556803.2 → XP_014412289.1  syntaxin-5 isoform X1

    UniProtKB/TrEMBL
    S9X4R5
    Related
    ENSCFEP00005008711.1, ENSCFET00005009831.1
    Conserved Domains (3) summary
    COG5325
    Location:182 → 324
    COG5325; t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
    cd15844
    Location:266 → 338
    SNARE_syntaxin5; SNARE motif of syntaxin 5
    pfam11416
    Location:53 → 74
    Syntaxin-5_N; Syntaxin-5 N-terminal, Sly1p-binding domain
Nucleotide Protein
Heading Accession and Version

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