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COL4A5 collagen type IV alpha 5 chain [ Camelus ferus (Wild Bactrian camel) ]

Gene ID: 102521464, updated on 10-Mar-2024

Summary

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Gene symbol
COL4A5
Gene description
collagen type IV alpha 5 chain
Locus tag
CB1_001993001
See related
EnsemblRapid:ENSCFEG00005019786
Gene type
protein coding
RefSeq status
MODEL
Organism
Camelus ferus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Tylopoda; Camelidae; Camelus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: X
Exon count:
54
Annotation release Status Assembly Chr Location
102 current BCGSAC_Cfer_1.0 (GCF_009834535.1) X NC_045732.1 (68309315..68505608, complement)
101 previous assembly CB1 (GCF_000311805.1) Unplaced Scaffold NW_006212166.1 (49156..165107)

Chromosome X - NC_045732.1Genomic Context describing neighboring genes Neighboring gene calpain 6 Neighboring gene doublecortin Neighboring gene collagen type IV alpha 6 chain Neighboring gene transfer RNA glycine (anticodon ACC) Neighboring gene autophagy related 4A cysteine peptidase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequences of wild and domestic bactrian camels. Bactrian Camels Genome Sequencing and Analysis Consortium, et al. Nat Commun, 2012. PMID 23149746, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables extracellular matrix structural constituent IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in basement membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of collagen trimer IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
collagen alpha-5(IV) chain

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Camelus ferus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BCGSAC_Cfer_1.0 Primary Assembly

Genomic

  1. NC_045732.1 Reference BCGSAC_Cfer_1.0 Primary Assembly

    Range
    68309315..68505608 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032476034.1 → XP_032331925.1  collagen alpha-5(IV) chain isoform X3

    UniProtKB/TrEMBL
    A0A8B8SPY1
    Conserved Domains (2) summary
    pfam01391
    Location:1080 → 1134
    Collagen; Collagen triple helix repeat (20 copies)
    pfam01413
    Location:1576 → 1685
    C4; C-terminal tandem repeated domain in type 4 procollagen

  2. XM_032476035.1 → XP_032331926.1  collagen alpha-5(IV) chain isoform X4

    UniProtKB/TrEMBL
    A0A8B8SP04
    Related
    ENSCFEP00005033208.1, ENSCFET00005036850.1
    Conserved Domains (2) summary
    pfam01391
    Location:1077 → 1131
    Collagen; Collagen triple helix repeat (20 copies)
    pfam01413
    Location:1573 → 1682
    C4; C-terminal tandem repeated domain in type 4 procollagen

  3. XM_032476033.1 → XP_032331924.1  collagen alpha-5(IV) chain isoform X2

    UniProtKB/TrEMBL
    A0A8B8SQ76
    Related
    ENSCFEP00005033195.1, ENSCFET00005036833.1
    Conserved Domains (2) summary
    pfam01391
    Location:1077 → 1131
    Collagen; Collagen triple helix repeat (20 copies)
    pfam01413
    Location:1579 → 1688
    C4; C-terminal tandem repeated domain in type 4 procollagen

  4. XM_032476032.1 → XP_032331923.1  collagen alpha-5(IV) chain isoform X1

    UniProtKB/TrEMBL
    A0A8B8SP22
    Conserved Domains (2) summary
    pfam01391
    Location:1080 → 1134
    Collagen; Collagen triple helix repeat (20 copies)
    pfam01413
    Location:1582 → 1691
    C4; C-terminal tandem repeated domain in type 4 procollagen
Nucleotide Protein
Heading Accession and Version

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