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SIX4 SIX homeobox 4 [ Camelus ferus (Wild Bactrian camel) ]

Gene ID: 102518037, updated on 10-Mar-2024

Summary

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Gene symbol
SIX4
Gene description
SIX homeobox 4
Locus tag
CB1_000839019
See related
EnsemblRapid:ENSCFEG00005001581
Gene type
protein coding
RefSeq status
MODEL
Organism
Camelus ferus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Tylopoda; Camelidae; Camelus
Orthologs
human mouse all
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Genomic context

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See SIX4 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
4
Annotation release Status Assembly Chr Location
102 current BCGSAC_Cfer_1.0 (GCF_009834535.1) 6 NC_045701.1 (59535133..59547542, complement)
101 previous assembly CB1 (GCF_000311805.1) Unplaced Scaffold NW_006211015.1 (2243306..2261474, complement)

Chromosome 6 - NC_045701.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA U3 Neighboring gene SIX homeobox 1 Neighboring gene MNAT1 component of CDK activating kinase Neighboring gene uncharacterized LOC116664297 Neighboring gene solute carrier family 38 member 6 Neighboring gene tRNA methyltransferase 5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of transcription regulator complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
homeobox protein SIX4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Camelus ferus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BCGSAC_Cfer_1.0 Primary Assembly

Genomic

  1. NC_045701.1 Reference BCGSAC_Cfer_1.0 Primary Assembly

    Range
    59535133..59547542 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032482141.1 → XP_032338032.1  homeobox protein SIX4 isoform X2

    UniProtKB/TrEMBL
    A0A8B8T7L2
    Related
    ENSCFEP00005002235.1, ENSCFET00005002605.1
    Conserved Domains (3) summary
    cd00086
    Location:223 → 277
    homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
    NF033176
    Location:331 → 668
    auto_AIDA-I; autotransporter adhesin AIDA-I
    pfam16878
    Location:103 → 212
    SIX1_SD; Transcriptional regulator, SIX1, N-terminal SD domain

  2. XM_032482140.1 → XP_032338031.1  homeobox protein SIX4 isoform X1

    UniProtKB/TrEMBL
    A0A8B8T702
    Related
    ENSCFEP00005002229.1, ENSCFET00005002599.1
    Conserved Domains (3) summary
    cd00086
    Location:231 → 285
    homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
    NF033176
    Location:339 → 676
    auto_AIDA-I; autotransporter adhesin AIDA-I
    pfam16878
    Location:111 → 220
    SIX1_SD; Transcriptional regulator, SIX1, N-terminal SD domain
Nucleotide Protein
Heading Accession and Version

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