U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

PTPN13 protein tyrosine phosphatase non-receptor type 13 [ Camelus ferus (Wild Bactrian camel) ]

Gene ID: 102510646, updated on 10-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
PTPN13
Gene description
protein tyrosine phosphatase non-receptor type 13
Locus tag
CB1_001299006
See related
EnsemblRapid:ENSCFEG00005003943
Gene type
protein coding
RefSeq status
MODEL
Organism
Camelus ferus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Tylopoda; Camelidae; Camelus
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 2
Exon count:
48
Annotation release Status Assembly Chr Location
102 current BCGSAC_Cfer_1.0 (GCF_009834535.1) 2 NC_045697.1 (41104403..41284085, complement)
101 previous assembly CB1 (GCF_000311805.1) Unplaced Scaffold NW_006211474.1 (1713344..1891706)

Chromosome 2 - NC_045697.1Genomic Context describing neighboring genes Neighboring gene chromosome 2 C4orf36 homolog Neighboring gene solute carrier family 10 member 6 Neighboring gene cytochrome c oxidase subunit 6A1, mitochondrial-like Neighboring gene mitogen-activated protein kinase 10 Neighboring gene U2 spliceosomal RNA Neighboring gene uncharacterized LOC116669316

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Genome sequences of wild and domestic bactrian camels. Bactrian Camels Genome Sequencing and Analysis Consortium, et al. Nat Commun, 2012. PMID 23149746, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables phosphatidylinositol 3-kinase regulatory subunit binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein tyrosine phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in peptidyl-tyrosine dephosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
LOW QUALITY PROTEIN: tyrosine-protein phosphatase non-receptor type 13

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Camelus ferus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BCGSAC_Cfer_1.0 Primary Assembly

Genomic

  1. NC_045697.1 Reference BCGSAC_Cfer_1.0 Primary Assembly

    Range
    41104403..41284085 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014563749.2 → XP_014419235.2  LOW QUALITY PROTEIN: tyrosine-protein phosphatase non-receptor type 13

    UniProtKB/TrEMBL
    A0A8B7KDE2
    Related
    ENSCFEP00005006238.1, ENSCFET00005007093.1
    Conserved Domains (8) summary
    smart00228
    Location:1500 → 1591
    PDZ; Domain present in PSD-95, Dlg, and ZO-1/2
    smart00295
    Location:574 → 782
    B41; Band 4.1 homologues
    smart00750
    Location:3 → 190
    KIND; kinase non-catalytic C-lobe domain
    cd00992
    Location:1367 → 1451
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    cd17195
    Location:572 → 667
    FERM_F1_PTPN13; FERM (Four.1 protein, Ezrin, Radixin, Moesin) domain, F1 sub-domain, found in tyrosine-protein phosphatase non-receptor type 13 (PTPN13)
    cd14597
    Location:2234 → 2467
    PTPc-N13; catalytic domain of tyrosine-protein phosphatase non-receptor type 13
    pfam16599
    Location:1178 → 1368
    PTN13_u3; Unstructured linker region on PTN13 protein between PDZ
    cl17171
    Location:778 → 878
    PH-like; Pleckstrin homology-like domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.