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    CDK9 cyclin-dependent kinase 9 [ Homo sapiens ]

    Gene ID: 1025, updated on 19-May-2012

    Summary

    Official Symbol
    CDK9provided by HGNC
    Official Full Name
    cyclin-dependent kinase 9provided by HGNC
    Primary source
    HGNC:1780
    Locus tag
    RP11-228B15.5
    See related
    Ensembl:ENSG00000136807; HPRD:16016; MIM:603251; Vega:OTTHUMG00000020715
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    TAK; C-2k; CTK1; CDC2L4; PITALRE
    Summary
    The protein encoded by this gene is a member of the cyclin-dependent protein kinase (CDK) family. CDK family members are highly similar to the gene products of S. cerevisiae cdc28, and S. pombe cdc2, and known as important cell cycle regulators. This kinase was found to be a component of the multiprotein complex TAK/P-TEFb, which is an elongation factor for RNA polymerase II-directed transcription and functions by phosphorylating the C-terminal domain of the largest subunit of RNA polymerase II. This protein forms a complex with and is regulated by its regulatory subunit cyclin T or cyclin K. HIV-1 Tat protein was found to interact with this protein and cyclin T, which suggested a possible involvement of this protein in AIDS. [provided by RefSeq, Jul 2008]

    Genomic context

    Location :
    9q34.1
    Sequence :
    Chromosome: 9; NC_000009.11 (130548305..130553052)
    See CDK9 in Epigenomics, MapViewer

    Chromosome 9 - NC_000009.11Genomic Context describing neighboring genes Neighboring gene SH2 domain containing 3C Neighboring gene microRNA 3960 Neighboring gene microRNA 2861 Neighboring gene folylpolyglutamate synthase Neighboring gene endoglin

    Genomic regions, transcripts, and products

    Bibliography

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    HIV-1 protein interactions

    Protein Gene Interaction Pubs
    Nef nef HIV-1 Nef interacts with Hsp40, leading to increased Hsp40 translocation to the nucleus of infected cells and facilitation of viral gene expression by complex formation of Hsp40 with the cdk9-associated transcription complex PubMed
    nef CDK9 mRNA and kinase activity are upregulated in HIV-1 Nef-expressing human T cell lines PubMed
    Tat tat HIV-1 Tat-induced kinase activity of P-TEFb is highly sensitive to flavopiridol, a CDK inhibitor. P-TEFb-mediated phosphorylation of RNAP II CTD, SPT5, and Tat-SF1 during HIV-1 transcription elongation is also highly sensitive to flavopiridol PubMed
    tat P-TEFb regulates HIV-1 Tat-mediated activation of transcription through two built-in autoinhibitory mechanisms, autophosphorylation of CDK9 and cyclin T1 binding to the transcription elongation factor Tat-SF1 PubMed
    tat HIV-1 Tat recruits P-TEFb to the HIV-1 Transcription Activation Response (TAR) RNA during Tat-mediated transactivation of the HIV-1 LTR promoter PubMed
    tat HIV-1 Tat-mediated stimulation of RNA polymerase II C-terminal domain phosphorylation by P-TEFb leads to stimulation of co-transcriptional capping of HIV-1 mRNA PubMed
    tat During HIV-1 Tat mediated transactivation of the HIV-1 LTR promoter, Tat stimulates the phosphorylation of the C-terminal domain (CTD) of RNA polymerase II by P-TEFb, leading to transcription elongation PubMed
    tat The p160 nuclear receptor co-activator GRIP1 binds to the N-terminal region of HIV-1 Tat, bridging HIV-1 LTR promoter-bound factors to the Tat-P-TEFb complex and enhancing the transactivating activity of Tat PubMed
    tat PARP1 negatively regulates HIV-1 transcription by directly competing with Tat-P-TEFb complex for binding to TAR RNA PubMed
    tat SKIP is required for Tat transactivation in vivo and stimulates HIV-1 transcription elongation by associating with CycT1:CDK9 (P-TEFb) and Tat:P-TEFb complexes both in nuclear extracts and in recombinant Tat:P-TEFb:TAR RNA complexes in vitro PubMed
    tat Cdk9, the catalytic subunit of P-TEFb, is ubiquitinated by Skp1/Cul1/F-box protein E3 ubiquitin ligase Skp2, which facilitates the formation of the RNA-protein complex between P-TEFb, Tat, and TAR, thereby enhancing Tat transactivation PubMed
    tat The growth factor granulin and the promyelocytic leukemia (PML) protein regulate HIV-1 Tat-mediated transcriptional activation by competing with the Tat interaction with cyclin T1/P-TEFb PubMed
    tat The N-terminus (amino acids 1-48, including activation domain) of HIV-1 Tat binds to P-TEFb through a direct interaction with the N-terminus (amino acids 1-290) of cyclin T1 during Tat-mediated transactivation of the HIV-1 LTR promoter PubMed
    tat TFIIH inhibits the phosphorylation of CDK9 in the HIV-1 transcription preinitiation complex, while HIV-1 Tat stimulates CDK9 autophosphorylation to activate transcription elongation PubMed
    tat Overexpression of CDK9 or CDK9 mutants inhibits HIV-1 Tat transcriptional activation PubMed
    tat Tat-SF1 is a required cofactor for HIV-1 Tat activity that complexes with P-TEFb and Tat, and stimulates Tat-mediated activation of the HIV-1 LTR promoter PubMed
    tat P-TEFb, Puralpha and HIV-1 Tat cooperate to activate the TNFalpha promoter PubMed
    tat Hsp70 and Hsp90/Cdc37 stabilize CDK9 as well as the assembly of an active P-TEFb complex which is stimulated by HIV-1 Tat during HIV-1 transcriptional activation PubMed
    tat HIV-1 Tat competes with CIITA for the binding to P-TEFb, leading to the downregulation of MHC class II gene expression PubMed
    tat The up and downregulation of expression of CDK9 and cyclin T1 or sequestration of cyclin T1 in infected cells may regulate HIV-1 latency by up or downregulating HIV-1 Tat transcriptional activation PubMed
    tat MAQ1 and 7SK RNA interact with P-TEFb and compete with the binding of HIV-1 Tat to cyclin T1, suggesting the TAR RNA/Tat lentivirus system evolved to subvert the cellular 7SK RNA/MAQ1 system PubMed
    tat The human I-mfa domain-containing protein (HIC) interacts with both P-TEFb and HIV-1 Tat, and modulates Tat transactivation of the HIV-1 LTR promoter PubMed
    tat Cyclin T1 is capable of recruiting CDK9 and HIV-1 Tat to splicing factor-rich nuclear speckle regions, suggesting nuclear speckles are a site of P-TEFb and Tat function PubMed
    tat The interaction of HIV-1 Tat with HIV-1 Transcription Activation Response (TAR) RNA is enhanced by the interaction of Tat with P-TEFb, and TAR RNA also enhances the interaction between Tat and cyclin T1 PubMed
    tat Amino acids 260-263 of cyclin T1 are critical for HIV-1 Tat-mediated transcriptional activation, and mediate the species specificity of cyclin T1 and P-TEFb binding to Tat PubMed
    tat P-TEFb is required for HIV-1 Tat-mediated transcriptional activation PubMed
    tat P-TEFb interacts with HIV-1 Tat as part of both the HIV-1 transcription preinitiation and elongation complexes PubMed
    tat Acetylation of HIV-1 Tat by cellular histone acetyltransferases regulates the binding of Tat to P-TEFb PubMed
    tat HIV-1 Tat stimulates the phosphorylation of SPT5 by P-TEFb during transactivation of the HIV-1 LTR promoter PubMed
    Vpr vpr HIV-1 Vpr interacts with CDK9 through binding to HIV-1 Tat and cyclin T1 in a ternary complex, Tat-Vpr-Cyclin T1-CDK9, and enhances Tat transactivation of the viral LTR promoter PubMed

    Go to the HIV-1, Human Protein Interaction Database

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description
    NP_001252.1 NP_001231.2 CCNT1    BIND  PubMed Cyclin T1 interacts with CDK9. 
    NP_001252.1 NP_001231.2 CCNT1    BIND  PubMed CyclinT1 interacts with Cdk9. 
    NP_001252.1 NP_001231.2 CCNT1    BIND  PubMed CycT1 interacts with CDK9. This interaction was modeled on a demonstrated interaction between CycT1 from an unspecified species and human CDK9. 
    NP_001252.1 NP_001232.1 CCNT2    BIND  PubMed CyclinT2a interacts with Cdk9. 
    NP_001252.1 NP_490595.1 CCNT2    BIND  PubMed CyclinT2b interacts with Cdk9. 
    NP_001252.1 NP_000928.1 POLR2A    BIND  PubMed CDK9 interacts with and phosphorylates POLR2A (RNAPII). This interaction was modelled on a demonstrated interaction between human CDK9 and POLR2A from an unspecified species. 
    P50750 Q9UHB7 AFF4    HPRD  PubMed  
    P50750 P10275 AR    HPRD  PubMed  
    P50750 O75909 CCNK    HPRD  PubMed  
    P50750 O60563 CCNT1    HPRD  PubMed  
    P50750 O60583 CCNT2    HPRD  PubMed  
    P50750 P49427 CDC34    HPRD  PubMed  
    P50750 Q15078 CDK5R1    HPRD  PubMed  
    P50750 O15194 CTDSPL    HPRD  PubMed  
    P50750 Q13616 CUL1    HPRD  PubMed  
    P50750 Q7L2E3 DHX30    HPRD  PubMed  
    P50750 P28799 GRN    HPRD  PubMed  
    P50750 Cardiac lineage protein 1 HEXIM1    HPRD  PubMed  
    P50750 Hexamthylene bis-acetamide inducible 2 HEXIM2    HPRD  PubMed  
    P50750 Heat shock 70 KD protein 1A HSPA1A    HPRD  PubMed  
    P50750 O43719 HTATSF1    HPRD  PubMed  
    P50750 P40189 IL6ST    HPRD  PubMed  
    P50750 Q13503 MED21    HPRD  PubMed  
    P50750 P10244 MYBL2    HPRD  PubMed  
    P50750 O60934 NBN    HPRD  PubMed  
    P50750 P19838 NFKB1    HPRD  PubMed  
    P50750 Q9Y5X4 NR2E3    HPRD  PubMed  
    P50750 Q13526 PIN1    HPRD  PubMed  
    P50750 P24928 POLR2A    HPRD  PubMed  
    P50750 P06400 RB1    HPRD  PubMed  
    P50750 Q04206 RELA    HPRD  PubMed  
    P50750 P50454 SERPINH1    HPRD  PubMed  
    P50750 Q13309 SKP2    HPRD  PubMed  
    P50750 Q9NRP7 STK36    HPRD  PubMed  
    P50750 O00267 SUPT5H    HPRD  PubMed  
    P50750 P04637 TP53    HPRD  PubMed  
    P50750 Q12933 TRAF2    HPRD  PubMed  
    P50750 O95789 ZMYM6    HPRD  PubMed  
    BioGRID:107459 BioGRID:110445 AFF1    BioGRID  PubMed Affinity Capture-MS; Affinity Capture-Western 
    BioGRID:107459 BioGRID:118016 AFF4    BioGRID  PubMed Affinity Capture-MS; Affinity Capture-Western 
    BioGRID:107459 BioGRID:106862 AR    BioGRID  PubMed Affinity Capture-Western; Reconstituted Complex 
    BioGRID:107459 BioGRID:115865 ARID3B    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:107459 BioGRID:106966 ATP1A1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:107459 BioGRID:107027 ATR    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:107459 BioGRID:313463 ATRIP    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:107459 BioGRID:117036 BRD4    BioGRID  PubMed Affinity Capture-MS; Affinity Capture-Western 
    BioGRID:107459 BioGRID:120526 CCDC87    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:107459 BioGRID:114339 CCNK    BioGRID  PubMed Reconstituted Complex; Two-hybrid 
    BioGRID:107459 BioGRID:107343 CCNT1    BioGRID  PubMed Affinity Capture-MS; Affinity Capture-Western; Biochemical Activity; Phenotypic Suppression; Reconstituted Complex; Two-hybrid 
    BioGRID:107459 BioGRID:107344 CCNT2    BioGRID  PubMed Affinity Capture-MS; Affinity Capture-Western; Reconstituted Complex 
    BioGRID:107459 BioGRID:113054 CCT3    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:107459 BioGRID:115826 CCT4    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:107459 BioGRID:116603 CCT5    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:107459 BioGRID:115933 CCT8    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:107459 BioGRID:107432 CDC34    BioGRID  PubMed Affinity Capture-Western; Reconstituted Complex 
    BioGRID:107459 BioGRID:116312 CDC37    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:107459 BioGRID:122724 CDC73    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:107459 BioGRID:107457 CDK7    BioGRID  PubMed Biochemical Activity 
    BioGRID:107459 BioGRID:107459 CDK9    BioGRID  PubMed Affinity Capture-Western; Biochemical Activity 
    BioGRID:107459 BioGRID:115137 CKAP5    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:107459 BioGRID:122015 CLSPN    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:107459 BioGRID:107843 CSNK2B    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:107459 BioGRID:107680 CTD    BioGRID  PubMed Biochemical Activity 
    BioGRID:107459 BioGRID:114597 CTDP1    BioGRID  PubMed Biochemical Activity 
    BioGRID:107459 BioGRID:114032 CUL1    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:107459 BioGRID:108021 DDX5    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:107459 BioGRID:116571 DHX30    BioGRID  PubMed Affinity Capture-MS; Affinity Capture-Western; Reconstituted Complex 
    BioGRID:107459 BioGRID:108174 DTYMK    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:107459 BioGRID:121243 EXOSC5    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:107459 BioGRID:236625 Ep300    BioGRID  PubMed Affinity Capture-Western; Reconstituted Complex 
    BioGRID:107459 BioGRID:108579 FKBP5    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:107459 BioGRID:108897 GATA6    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:107459 BioGRID:109153 GRN    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:107459 BioGRID:109217 GTF2F1    BioGRID  PubMed Biochemical Activity 
    BioGRID:107459 BioGRID:199841 Gata4    BioGRID  PubMed Affinity Capture-Western; Reconstituted Complex 
    BioGRID:107459 BioGRID:115860 HEXIM1    BioGRID  PubMed Affinity Capture-MS; Affinity Capture-Western; Reconstituted Complex 
    BioGRID:107459 BioGRID:125888 HEXIM2    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:107459 BioGRID:116149 HNRNPA0    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:107459 BioGRID:109420 HNRNPA1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:107459 BioGRID:109422 HNRNPA2B1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:107459 BioGRID:109425 HNRNPD    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:107459 BioGRID:109428 HNRNPH1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:107459 BioGRID:109431 HNRNPK    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:107459 BioGRID:115530 HNRNPR    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:107459 BioGRID:109433 HNRNPU    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:107459 BioGRID:109552 HSP90AA1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:107459 BioGRID:109558 HSP90AB1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:107459 BioGRID:109535 HSPA1A    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:107459 BioGRID:109538 HSPA2    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:107459 BioGRID:109541 HSPA5    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:107459 BioGRID:109542 HSPA6    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:107459 BioGRID:109561 HSPD1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:107459 BioGRID:115886 IGF2BP1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:107459 BioGRID:115888 IGF2BP2    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:107459 BioGRID:109786 IL6ST    BioGRID  PubMed Reconstituted Complex 
    BioGRID:107459 BioGRID:109821 ILF2    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:107459 BioGRID:121775 KIAA1967    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:107459 BioGRID:110036 KPNA2    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:107459 BioGRID:119619 LARP7    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:107459 BioGRID:110311 MARS    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:107459 BioGRID:115126 MATR3    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:107459 BioGRID:119002 MDFIC    BioGRID  PubMed Affinity Capture-Western; Reconstituted Complex 
    BioGRID:107459 BioGRID:110358 MDM2    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:107459 BioGRID:111465 MED1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:107459 BioGRID:115293 MED12    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:107459 BioGRID:123219 MED28    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:107459 BioGRID:121122 MEPCE    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:107459 BioGRID:110443 MLL    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:107459 BioGRID:110444 MLLT1    BioGRID  PubMed Affinity Capture-MS; Affinity Capture-Western 
    BioGRID:107459 BioGRID:110446 MLLT3    BioGRID  PubMed Affinity Capture-MS; Affinity Capture-Western 
    BioGRID:107459 BioGRID:116731 MRPS27    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:107459 BioGRID:110573 MSH2    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:107459 BioGRID:110690 MYBL2    BioGRID  PubMed Affinity Capture-Western; Biochemical Activity; Phenotypic Suppression; Reconstituted Complex 
    BioGRID:107459 BioGRID:110694 MYC    BioGRID  PubMed Affinity Capture-Western; Reconstituted Complex 
    BioGRID:107459 BioGRID:115320 NR2E3    BioGRID  PubMed Affinity Capture-Western; Reconstituted Complex 
    BioGRID:107459 BioGRID:117807 NUFIP1    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:107459 BioGRID:111072 P4HA1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:107459 BioGRID:111127 PCBP2    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:107459 BioGRID:111246 PGC    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:107459 BioGRID:111391 PMS1    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:107459 BioGRID:111426 POLR2A    BioGRID  PubMed Biochemical Activity 
    BioGRID:107459 BioGRID:159574 POLR2A    BioGRID  PubMed Biochemical Activity; Reconstituted Complex 
    BioGRID:107459 BioGRID:111822 RAD21    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:107459 BioGRID:111860 RB1    BioGRID  PubMed Affinity Capture-Western; Reconstituted Complex 
    BioGRID:107459 BioGRID:114952 RBM39    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:107459 BioGRID:111902 RELA    BioGRID  PubMed Affinity Capture-Western; Reconstituted Complex 
    BioGRID:107459 BioGRID:111916 RFC4    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:107459 BioGRID:125912 RN7SK    BioGRID  PubMed Affinity Capture-RNA; Protein-RNA 
    BioGRID:107459 BioGRID:112099 RPN1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:107459 BioGRID:112105 RPS4X    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:107459 BioGRID:114573 RQCD1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:107459 BioGRID:114166 RUVBL1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:107459 BioGRID:116067 RUVBL2    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:107459 BioGRID:115082 SART3    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:107459 BioGRID:112391 SKP1    BioGRID  PubMed Affinity Capture-Western; Reconstituted Complex 
    BioGRID:107459 BioGRID:112393 SKP2    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:107459 BioGRID:110261 SMAD1    BioGRID  PubMed Biochemical Activity 
    BioGRID:107459 BioGRID:110262 SMAD2    BioGRID  PubMed Biochemical Activity 
    BioGRID:107459 BioGRID:110263 SMAD3    BioGRID  PubMed Biochemical Activity 
    BioGRID:107459 BioGRID:125635 SNRPD2P1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:107459 BioGRID:116597 SNW1    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:107459 BioGRID:112651 STAT3    BioGRID  PubMed Affinity Capture-Western; Reconstituted Complex 
    BioGRID:107459 BioGRID:116367 SUPT16H    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:107459 BioGRID:112697 SUPT5H    BioGRID  PubMed Biochemical Activity; Reconstituted Complex 
    BioGRID:107459 BioGRID:115755 SYNCRIP    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:107459 BioGRID:112742 TAF7    BioGRID  PubMed Reconstituted Complex 
    BioGRID:107459 BioGRID:112749 TAL1    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:107459 BioGRID:112761 TAT    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:107459 BioGRID:112779 TCEA1    BioGRID  PubMed Affinity Capture-Western; Co-localization; Reconstituted Complex 
    BioGRID:107459 BioGRID:112872 TERF1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:107459 BioGRID:112873 TERF2    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:107459 BioGRID:113010 TP53    BioGRID  PubMed Phenotypic Suppression 
    BioGRID:107459 BioGRID:115457 TRIM28    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:107459 BioGRID:119625 TRIM33    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:107459 BioGRID:114731 TRIP12    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:107459 BioGRID:115656 TUBB4B    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:107459 BioGRID:113164 UBC    BioGRID  PubMed Affinity Capture-MS; Affinity Capture-Western; Reconstituted Complex 
    BioGRID:107459 BioGRID:113885 UBL4A    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:107459 BioGRID:119501 UBR5    BioGRID  PubMed Affinity Capture-Western; Biochemical Activity; Co-localization 
    BioGRID:107459 BioGRID:110959 YBX1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:107459 BioGRID:116719 ZC3H13    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:107459 BioGRID:1205541 tat    BioGRID  PubMed Affinity Capture-Western 

    General gene information

    Markers

    Homology

    • Homologs of the CDK9 gene: The CDK9 gene is conserved in chimpanzee, , dog, cow, mouse, rat, chicken, zebrafish, fruit fly, mosquito, C.elegans, S.cerevisiae, K.lactis, , and S.pombe.
    • Map Viewer (Mouse, Rat)

    Pathways from BioSystems

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    ATP binding IEA
    Inferred from Electronic Annotation
    more info
     
    DNA binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    RNA polymerase II carboxy-terminal domain kinase activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    cyclin-dependent protein kinase activity IEA
    Inferred from Electronic Annotation
    more info
     
    nucleotide binding IEA
    Inferred from Electronic Annotation
    more info
     
    protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    protein kinase activity TAS
    Traceable Author Statement
    more info
    PubMed 
    snRNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    transcription regulatory region DNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    cell cycle TAS
    Traceable Author Statement
    more info
    PubMed 
    cell proliferation TAS
    Traceable Author Statement
    more info
    PubMed 
    cellular response to cytokine stimulus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    gene expression TAS
    Traceable Author Statement
    more info
     
    negative regulation of cell cycle arrest IDA
    Inferred from Direct Assay
    more info
     
    positive regulation of viral transcription TAS
    Traceable Author Statement
    more info
     
    protein phosphorylation IDA
    Inferred from Direct Assay
    more info
    PubMed 
    protein phosphorylation TAS
    Traceable Author Statement
    more info
    PubMed 
    regulation of DNA repair IDA
    Inferred from Direct Assay
    more info
     
    regulation of histone modification IDA
    Inferred from Direct Assay
    more info
    PubMed 
    regulation of transcription, DNA-dependent IEA
    Inferred from Electronic Annotation
    more info
     
    replication fork arrest IDA
    Inferred from Direct Assay
    more info
     
    transcription elongation from RNA polymerase II promoter TAS
    Traceable Author Statement
    more info
     
    transcription from RNA polymerase II promoter TAS
    Traceable Author Statement
    more info
     
    transcription initiation from RNA polymerase II promoter TAS
    Traceable Author Statement
    more info
    PubMed 
    viral reproduction TAS
    Traceable Author Statement
    more info
     
    Component Evidence Code Pubs
    PML body IDA
    Inferred from Direct Assay
    more info
    PubMed 
    cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    intracellular membrane-bounded organelle IDA
    Inferred from Direct Assay
    more info
    PubMed 
    NOT nucleolus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    nucleoplasm TAS
    Traceable Author Statement
    more info
     
    nucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    transcription elongation factor complex TAS
    Traceable Author Statement
    more info
    PubMed 

    General protein information

    Preferred Names
    cyclin-dependent kinase 9
    Names
    cyclin-dependent kinase 9
    CDC2-related kinase
    cell division protein kinase 9
    serine/threonine protein kinase PITALRE
    serine/threonine-protein kinase PITALRE
    cell division cycle 2-like protein kinase 4
    tat-associated kinase complex catalytic subunit
    NP_001252.1

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001261.3NP_001252.1  cyclin-dependent kinase 9

      Status: REVIEWED

      Source sequence(s)
      BC001968, BE549667, BX091973, DB120461
      Consensus CDS
      CCDS6879.1
      UniProtKB/Swiss-Prot
      P50750
      Related
      ENSP00000362361, OTTHUMP00000022198, ENST00000373264, OTTHUMT00000054235
      Conserved Domains (2) summary
      cd07865
      Location:6315
      Blast Score: 1728
      STKc_CDK9; Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9
      smart00220
      Location:19315
      Blast Score: 698
      S_TKc; Serine/Threonine protein kinases, catalytic domain

    RefSeqs of Annotated Genomes: Build 37.3

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh37.p5 Primary Assembly

    Genomic

    1. NC_000009.11 Reference GRCh37.p5 Primary Assembly

      Range
      130548305..130553052
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate HuRef

    Genomic

    1. AC_000141.1 Alternate HuRef

      Range
      100164574..100169598
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Related Sequences

    Nucleotide Protein
    Heading Accession and Version
    genomic AF255306.1 AAF72183.1
    genomic AF517840.1 AAM54039.1
    genomic AL162586.26 CAI39768.1
    genomic CH471090.1 EAW87696.1
      EAW87697.1
    mRNA AB451289.1 BAG70103.1
    mRNA AB451421.1 BAG70235.1
    mRNA AK313828.1 BAG36563.1
    mRNA BC001968.1 AAH01968.1
    mRNA BE549667.1 None
    mRNA BT019903.1 AAV38706.1
    mRNA BX091973.1 None
    mRNA DB120461.1 None
    mRNA L25676.1 AAA35668.1
    mRNA X80230.1 CAA56516.1
    other-genetic DQ891182.2 ABM82108.1
    other-genetic DQ894364.2 ABM85290.1
    other-genetic DQ894365.2 ABM85291.1
    Protein Accession Links
    GenPept Link UniProtKB Link
    P50750.3 GenPept UniProtKB/Swiss-Prot:P50750

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