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ALX1 ALX homeobox 1 [ Tupaia chinensis (Chinese tree shrew) ]

Gene ID: 102472136, updated on 10-Mar-2024

Summary

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Gene symbol
ALX1
Gene description
ALX homeobox 1
Locus tag
TREES_T100001342
Gene type
protein coding
RefSeq status
MODEL
Organism
Tupaia chinensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Scandentia; Tupaiidae; Tupaia
Orthologs
human mouse all
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Genomic context

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See ALX1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
102 current TupChi_1.0 (GCF_000334495.1) Unplaced Scaffold NW_006207163.1 (2558230..2581669, complement)

NW_006207163.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102471868 Neighboring gene U6 spliceosomal RNA Neighboring gene leucine rich repeats and IQ motif containing 1 Neighboring gene protein/nucleic acid deglycase DJ-1 pseudogene Neighboring gene tetraspanin 19

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006207163 Unplaced Scaffold Reference TupChi_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription activator activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in embryonic skeletal system morphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ALX homeobox protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Tupaia chinensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference TupChi_1.0

Genomic

  1. NW_006207163.1 Reference TupChi_1.0

    Range
    2558230..2581669 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006169612.1 → XP_006169674.1  ALX homeobox protein 1

    Conserved Domains (3) summary
    COG5576
    Location:98 → 227
    COG5576; Homeodomain-containing transcription factor [Transcription]
    pfam00046
    Location:135 → 188
    Homeobox; Homeobox domain
    pfam03826
    Location:302 → 319
    OAR; OAR domain
Nucleotide Protein
Heading Accession and Version

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