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DKC1 dyskerin pseudouridine synthase 1 [ Tupaia chinensis (Chinese tree shrew) ]

Gene ID: 102470745, updated on 11-Apr-2024

Summary

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Gene symbol
DKC1
Gene description
dyskerin pseudouridine synthase 1
Locus tag
TREES_T100013808
Gene type
protein coding
RefSeq status
MODEL
Organism
Tupaia chinensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Scandentia; Tupaiidae; Tupaia
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
17
Annotation release Status Assembly Chr Location
102 current TupChi_1.0 (GCF_000334495.1) Unplaced Scaffold NW_006209094.1 (346324..369099)

NW_006209094.1Genomic Context describing neighboring genes Neighboring gene GRB2 associated binding protein 3 Neighboring gene mortality factor 4-like protein 2 Neighboring gene small nucleolar RNA SNORA36 family Neighboring gene small nucleolar RNA SNORA56 Neighboring gene MAGUK p55 scaffold protein 1 Neighboring gene small integral membrane protein 9

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006209094 Unplaced Scaffold Reference TupChi_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables pseudouridine synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in box H/ACA sno(s)RNA 3'-end processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mRNA pseudouridine synthesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in rRNA pseudouridine synthesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in snRNA pseudouridine synthesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of box H/ACA snoRNP complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
H/ACA ribonucleoprotein complex subunit DKC1
Names
H/ACA ribonucleoprotein complex subunit 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Tupaia chinensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference TupChi_1.0

Genomic

  1. NW_006209094.1 Reference TupChi_1.0

    Range
    346324..369099
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014585226.1 → XP_014440712.1  H/ACA ribonucleoprotein complex subunit DKC1

    Conserved Domains (4) summary
    cd02572
    Location:259 → 441
    PseudoU_synth_hDyskerin; Pseudouridine synthase, human dyskerin like
    TIGR00425
    Location:227 → 552
    CBF5; rRNA pseudouridine synthase, putative
    pfam01472
    Location:468 → 541
    PUA; PUA domain
    pfam08068
    Location:220 → 277
    DKCLD; DKCLD (NUC011) domain
Nucleotide Protein
Heading Accession and Version

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