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WDR47 WD repeat domain 47 [ Pelodiscus sinensis (Chinese soft-shelled turtle) ]

Gene ID: 102459512, updated on 10-Mar-2024

Summary

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Gene symbol
WDR47
Gene description
WD repeat domain 47
See related
Ensembl:ENSPSIG00000009793
Gene type
protein coding
RefSeq status
MODEL
Organism
Pelodiscus sinensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Trionychia; Trionychidae; Pelodiscus
Orthologs
human mouse all
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Genomic context

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See WDR47 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
15
Annotation release Status Assembly Chr Location
102 current PelSin_1.0 (GCF_000230535.1) Unplaced Scaffold NW_005857748.1 (293646..354577, complement)

NW_005857748.1Genomic Context describing neighboring genes Neighboring gene syntaxin binding protein 3 Neighboring gene AKNA domain containing 1 Neighboring gene G protein signaling modulator 2 Neighboring gene chloride channel CLIC like 1 Neighboring gene uncharacterized LOC112547381 Neighboring gene calmodulin regulated spectrin associated protein family member 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005857748 Unplaced Scaffold Reference PelSin_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
WD repeat-containing protein 47

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pelodiscus sinensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PelSin_1.0 Primary Assembly

Genomic

  1. NW_005857748.1 Reference PelSin_1.0 Primary Assembly

    Range
    293646..354577 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006132626.3 → XP_006132688.1  WD repeat-containing protein 47 isoform X4

    Conserved Domains (5) summary
    smart00667
    Location:9 → 42
    LisH; Lissencephaly type-1-like homology motif
    smart00668
    Location:45 → 102
    CTLH; C-terminal to LisH motif
    COG2319
    Location:606 → 918
    WD40; WD40 repeat [General function prediction only]
    cd00200
    Location:599 → 915
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:611 → 659
    7WD40; WD40 repeat [structural motif]

  2. XM_006132624.3 → XP_006132686.1  WD repeat-containing protein 47 isoform X2

    Conserved Domains (5) summary
    smart00667
    Location:9 → 42
    LisH; Lissencephaly type-1-like homology motif
    smart00668
    Location:45 → 102
    CTLH; C-terminal to LisH motif
    COG2319
    Location:521 → 921
    WD40; WD40 repeat [General function prediction only]
    cd00200
    Location:605 → 921
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:617 → 665
    7WD40; WD40 repeat [structural motif]

  3. XM_006132625.3 → XP_006132687.1  WD repeat-containing protein 47 isoform X3

    Conserved Domains (5) summary
    smart00667
    Location:9 → 42
    LisH; Lissencephaly type-1-like homology motif
    smart00668
    Location:45 → 102
    CTLH; C-terminal to LisH motif
    COG2319
    Location:607 → 919
    WD40; WD40 repeat [General function prediction only]
    cd00200
    Location:600 → 916
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:612 → 660
    7WD40; WD40 repeat [structural motif]

  4. XM_006132623.3 → XP_006132685.1  WD repeat-containing protein 47 isoform X1

    UniProtKB/TrEMBL
    K7FRZ2
    Related
    ENSPSIP00000010802.1, ENSPSIT00000010858.1
    Conserved Domains (5) summary
    smart00667
    Location:9 → 42
    LisH; Lissencephaly type-1-like homology motif
    smart00668
    Location:45 → 102
    CTLH; C-terminal to LisH motif
    COG2319
    Location:522 → 922
    WD40; WD40 repeat [General function prediction only]
    cd00200
    Location:606 → 922
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:618 → 666
    7WD40; WD40 repeat [structural motif]
Nucleotide Protein
Heading Accession and Version

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