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WHRN whirlin [ Pelodiscus sinensis (Chinese soft-shelled turtle) ]

Gene ID: 102457849, updated on 10-Mar-2024

Summary

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Gene symbol
WHRN
Gene description
whirlin
Gene type
protein coding
RefSeq status
MODEL
Organism
Pelodiscus sinensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Trionychia; Trionychidae; Pelodiscus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
14
Annotation release Status Assembly Chr Location
102 current PelSin_1.0 (GCF_000230535.1) Unplaced Scaffold NW_005870996.1 (1500854..1586564, complement)

NW_005870996.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102454347 Neighboring gene AT-hook transcription factor Neighboring gene ATPase H+ transporting V1 subunit G1 Neighboring gene transmembrane protein 268

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005870996 Unplaced Scaffold Reference PelSin_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in auditory receptor cell stereocilium organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sensory perception of sound IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cilium IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in photoreceptor inner segment IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of stereocilia ankle link complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in stereocilium tip IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
whirlin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pelodiscus sinensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PelSin_1.0 Primary Assembly

Genomic

  1. NW_005870996.1 Reference PelSin_1.0 Primary Assembly

    Range
    1500854..1586564 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025178520.1 → XP_025034305.1  whirlin

    Conserved Domains (4) summary
    smart00228
    Location:685 → 746
    PDZ; Domain present in PSD-95, Dlg, and ZO-1/2
    cd00992
    Location:117 → 197
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    cl11968
    Location:280 → 342
    harmonin_N_like; N-terminal protein-binding module of harmonin and similar domains, also known as HHD (harmonin homology domain)
    cl25496
    Location:442 → 625
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
Nucleotide Protein
Heading Accession and Version

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