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LOC102451458 syntaphilin [ Pelodiscus sinensis (Chinese soft-shelled turtle) ]

Gene ID: 102451458, updated on 9-Nov-2023

Summary

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Gene symbol
LOC102451458
Gene description
syntaphilin
Gene type
protein coding
RefSeq status
MODEL
Organism
Pelodiscus sinensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Trionychia; Trionychidae; Pelodiscus
Also known as
SNPH
Annotation information
Annotation category: partial on reference assembly
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Genomic context

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Location:
chromosome: Un
Exon count:
2
Annotation release Status Assembly Chr Location
102 current PelSin_1.0 (GCF_000230535.1) Unplaced Scaffold NW_005857743.1 (811..2312)

NW_005857743.1Genomic Context describing neighboring genes Neighboring gene syndecan binding protein 2 Neighboring gene peptidyl-prolyl cis-trans isomerase FKBP1A

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005857743 Unplaced Scaffold Reference PelSin_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in neuron differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasmic microtubule IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: syntaphilin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pelodiscus sinensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PelSin_1.0 Primary Assembly

Genomic

  1. NW_005857743.1 Reference PelSin_1.0 Primary Assembly

    Range
    811..2312
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014578236.2 → XP_014433722.1  LOW QUALITY PROTEIN: syntaphilin

    UniProtKB/TrEMBL
    K7FTN9
    Conserved Domains (1) summary
    pfam15290
    Location:26 → 163
    Syntaphilin; Golgi-localized syntaxin-1-binding clamp
Nucleotide Protein
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