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MIB1 MIB E3 ubiquitin protein ligase 1 [ Pelodiscus sinensis (Chinese soft-shelled turtle) ]

Gene ID: 102445400, updated on 10-Mar-2024

Summary

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Gene symbol
MIB1
Gene description
MIB E3 ubiquitin protein ligase 1
See related
Ensembl:ENSPSIG00000008755
Gene type
protein coding
RefSeq status
MODEL
Organism
Pelodiscus sinensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Trionychia; Trionychidae; Pelodiscus
Orthologs
human mouse all
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Genomic context

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See MIB1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
22
Annotation release Status Assembly Chr Location
102 current PelSin_1.0 (GCF_000230535.1) Unplaced Scaffold NW_005871031.1 (5304932..5406591)

NW_005871031.1Genomic Context describing neighboring genes Neighboring gene establishment of sister chromatid cohesion N-acetyltransferase 1 Neighboring gene abhydrolase domain containing 3, phospholipase Neighboring gene uncharacterized LOC102445141 Neighboring gene uncharacterized LOC112544032 Neighboring gene GATA binding protein 6

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005871031 Unplaced Scaffold Reference PelSin_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin-protein transferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein ubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
E3 ubiquitin-protein ligase MIB1
Names
mindbomb E3 ubiquitin protein ligase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pelodiscus sinensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PelSin_1.0 Primary Assembly

Genomic

  1. NW_005871031.1 Reference PelSin_1.0 Primary Assembly

    Range
    5304932..5406591
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006139055.3 → XP_006139117.1  E3 ubiquitin-protein ligase MIB1 isoform X1

    Conserved Domains (9) summary
    COG0666
    Location:494 → 756
    ANKYR; Ankyrin repeat [Signal transduction mechanisms]
    cd00204
    Location:524 → 652
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    cd02339
    Location:83 → 127
    ZZ_Mind_bomb; Zinc finger, ZZ type. Zinc finger present in Drosophila Mind bomb (D-mib) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Mind bomb is an E3 ubiqitin ligase that has ...
    pfam06701
    Location:154 → 218
    MIB_HERC2; Mib_herc2
    pfam12796
    Location:406 → 494
    Ank_2; Ankyrin repeats (3 copies)
    pfam13920
    Location:862 → 907
    zf-C3HC4_3; Zinc finger, C3HC4 type (RING finger)
    sd00045
    Location:562 → 593
    ANK; ANK repeat [structural motif]
    cl02529
    Location:435 → 484
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    cl19548
    Location:301 → 453
    DUF515; Protein of unknown function (DUF515)

  2. XM_006139056.3 → XP_006139118.1  E3 ubiquitin-protein ligase MIB1 isoform X2

    UniProtKB/TrEMBL
    K7FPC5
    Related
    ENSPSIP00000009885.1, ENSPSIT00000009935.1
    Conserved Domains (9) summary
    COG0666
    Location:494 → 756
    ANKYR; Ankyrin repeat [Signal transduction mechanisms]
    cd00204
    Location:524 → 652
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    cd02339
    Location:83 → 127
    ZZ_Mind_bomb; Zinc finger, ZZ type. Zinc finger present in Drosophila Mind bomb (D-mib) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Mind bomb is an E3 ubiqitin ligase that has ...
    pfam06701
    Location:154 → 218
    MIB_HERC2; Mib_herc2
    pfam12796
    Location:406 → 494
    Ank_2; Ankyrin repeats (3 copies)
    pfam13920
    Location:862 → 907
    zf-C3HC4_3; Zinc finger, C3HC4 type (RING finger)
    sd00045
    Location:562 → 593
    ANK; ANK repeat [structural motif]
    cl02529
    Location:435 → 484
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    cl19548
    Location:301 → 453
    DUF515; Protein of unknown function (DUF515)

  3. XM_006139057.3 → XP_006139119.1  E3 ubiquitin-protein ligase MIB1 isoform X3

    Conserved Domains (9) summary
    COG0666
    Location:494 → 756
    ANKYR; Ankyrin repeat [Signal transduction mechanisms]
    cd00204
    Location:524 → 652
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    cd02339
    Location:83 → 127
    ZZ_Mind_bomb; Zinc finger, ZZ type. Zinc finger present in Drosophila Mind bomb (D-mib) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Mind bomb is an E3 ubiqitin ligase that has ...
    pfam06701
    Location:154 → 218
    MIB_HERC2; Mib_herc2
    pfam12796
    Location:406 → 494
    Ank_2; Ankyrin repeats (3 copies)
    pfam13920
    Location:862 → 907
    zf-C3HC4_3; Zinc finger, C3HC4 type (RING finger)
    sd00045
    Location:562 → 593
    ANK; ANK repeat [structural motif]
    cl02529
    Location:435 → 484
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    cl19548
    Location:301 → 453
    DUF515; Protein of unknown function (DUF515)
Nucleotide Protein
Heading Accession and Version

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