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PRDM4 PR/SET domain 4 [ Pelodiscus sinensis (Chinese soft-shelled turtle) ]

Gene ID: 102445392, updated on 10-Mar-2024

Summary

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Gene symbol
PRDM4
Gene description
PR/SET domain 4
See related
Ensembl:ENSPSIG00000012066
Gene type
protein coding
RefSeq status
MODEL
Organism
Pelodiscus sinensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Trionychia; Trionychidae; Pelodiscus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
102 current PelSin_1.0 (GCF_000230535.1) Unplaced Scaffold NW_005871013.1 (2329490..2364005)

NW_005871013.1Genomic Context describing neighboring genes Neighboring gene RNA 2',3'-cyclic phosphate and 5'-OH ligase Neighboring gene achaete-scute family bHLH transcription factor 4 Neighboring gene PWP1 homolog, endonuclein Neighboring gene ankyrin repeat and BTB domain containing 3 Neighboring gene uncharacterized LOC102445945

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005871013 Unplaced Scaffold Reference PelSin_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables histone deacetylase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables histone methyltransferase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell fate commitment IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
PR domain zinc finger protein 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pelodiscus sinensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PelSin_1.0 Primary Assembly

Genomic

  1. NW_005871013.1 Reference PelSin_1.0 Primary Assembly

    Range
    2329490..2364005
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006137977.3 → XP_006138039.1  PR domain zinc finger protein 4 isoform X1

    UniProtKB/TrEMBL
    K7FZG4
    Conserved Domains (6) summary
    smart00317
    Location:429 → 536
    SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
    COG5048
    Location:616 → 740
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:623 → 643
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:621 → 643
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:635 → 660
    zf-H2C2_2; Zinc-finger double domain
    cl11540
    Location:675 → 732
    Mu-like_Com; Mu-like prophage protein Com

  2. XM_006137979.3 → XP_006138041.1  PR domain zinc finger protein 4 isoform X3

    UniProtKB/TrEMBL
    K7FZG4
    Conserved Domains (6) summary
    smart00317
    Location:294 → 401
    SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
    COG5048
    Location:481 → 605
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:488 → 508
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:486 → 508
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:500 → 525
    zf-H2C2_2; Zinc-finger double domain
    cl11540
    Location:540 → 597
    Mu-like_Com; Mu-like prophage protein Com

  3. XM_006137978.2 → XP_006138040.1  PR domain zinc finger protein 4 isoform X2

    UniProtKB/TrEMBL
    K7FZG4
    Related
    ENSPSIP00000013424.1, ENSPSIT00000013487.1
    Conserved Domains (6) summary
    smart00317
    Location:421 → 529
    SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
    COG5048
    Location:609 → 733
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:616 → 636
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:614 → 636
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:628 → 653
    zf-H2C2_2; Zinc-finger double domain
    cl11540
    Location:668 → 725
    Mu-like_Com; Mu-like prophage protein Com
Nucleotide Protein
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