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PGBD5 piggyBac transposable element derived 5 [ Pelodiscus sinensis (Chinese soft-shelled turtle) ]

Gene ID: 102444370, updated on 10-Mar-2024

Summary

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Gene symbol
PGBD5
Gene description
piggyBac transposable element derived 5
See related
Ensembl:ENSPSIG00000017942
Gene type
protein coding
RefSeq status
MODEL
Organism
Pelodiscus sinensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Trionychia; Trionychidae; Pelodiscus
Orthologs
human mouse all
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Genomic context

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See PGBD5 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
102 current PelSin_1.0 (GCF_000230535.1) Unplaced Scaffold NW_005854880.1 (2520950..2626425)

NW_005854880.1Genomic Context describing neighboring genes Neighboring gene angiotensinogen Neighboring gene component of oligomeric golgi complex 2 Neighboring gene polypeptide N-acetylgalactosaminyltransferase 2 Neighboring gene uncharacterized LOC112545599 Neighboring gene uncharacterized LOC112545600

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005854880 Unplaced Scaffold Reference PelSin_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables transposase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in non-replicative DNA transposition IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
piggyBac transposable element-derived protein 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pelodiscus sinensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PelSin_1.0 Primary Assembly

Genomic

  1. NW_005854880.1 Reference PelSin_1.0 Primary Assembly

    Range
    2520950..2626425
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006121999.3 → XP_006122061.1  piggyBac transposable element-derived protein 5 isoform X2

    See identical proteins and their annotated locations for XP_006122061.1

    Conserved Domains (1) summary
    pfam13843
    Location:6 → 371
    DDE_Tnp_1_7; Transposase IS4

  2. XM_025184078.1 → XP_025039863.1  piggyBac transposable element-derived protein 5 isoform X1

    Conserved Domains (1) summary
    pfam13843
    Location:6 → 371
    DDE_Tnp_1_7; Transposase IS4

  3. XM_006121998.3 → XP_006122060.1  piggyBac transposable element-derived protein 5 isoform X3

    UniProtKB/TrEMBL
    K7GIZ5
    Related
    ENSPSIP00000020256.1, ENSPSIT00000020351.1
    Conserved Domains (1) summary
    pfam13843
    Location:6 → 371
    DDE_Tnp_1_7; Transposase IS4

  4. XM_006121997.3 → XP_006122059.1  piggyBac transposable element-derived protein 5 isoform X2

    See identical proteins and their annotated locations for XP_006122059.1

    Conserved Domains (1) summary
    pfam13843
    Location:6 → 371
    DDE_Tnp_1_7; Transposase IS4

RNA

  1. XR_003089125.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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