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EXOSC9 exosome component 9 [ Myotis lucifugus (little brown bat) ]

Gene ID: 102442845, updated on 11-Apr-2024

Summary

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Gene symbol
EXOSC9
Gene description
exosome component 9
See related
Ensembl:ENSMLUG00000005167
Gene type
protein coding
RefSeq status
MODEL
Organism
Myotis lucifugus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yangochiroptera; Vespertilionidae; Myotis
Orthologs
human mouse all
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Genomic context

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See EXOSC9 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
102 current Myoluc2.0 (GCF_000147115.1) Unplaced Scaffold NW_005871857.1 (171249..183966, complement)

NW_005871857.1Genomic Context describing neighboring genes Neighboring gene transient receptor potential cation channel subfamily C member 3 Neighboring gene Bardet-Biedl syndrome 7 Neighboring gene U6 spliceosomal RNA Neighboring gene cyclin A2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005871857 Unplaced Scaffold Reference Myoluc2.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in TRAMP-dependent tRNA surveillance pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in U1 snRNA 3'-end processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in U4 snRNA 3'-end processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in U5 snRNA 3'-end processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nuclear mRNA surveillance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nuclear polyadenylation-dependent mRNA catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nuclear polyadenylation-dependent rRNA catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of cytoplasmic exosome (RNase complex) IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of nuclear exosome (RNase complex) IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
exosome complex component RRP45

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Myotis lucifugus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Myoluc2.0

Genomic

  1. NW_005871857.1 Reference Myoluc2.0

    Range
    171249..183966 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006106346.3 → XP_006106408.1  exosome complex component RRP45 isoform X2

    UniProtKB/TrEMBL
    G1P449
    Related
    ENSMLUP00000004716.2, ENSMLUT00000005169.2
    Conserved Domains (2) summary
    cd11368
    Location:6 → 264
    RNase_PH_RRP45; RRP45 subunit of eukaryotic exosome
    COG2123
    Location:10 → 271
    Rrp42; Exosome complex RNA-binding protein Rrp42, RNase PH superfamily [Translation, ribosomal structure and biogenesis]

  2. XM_023747179.1 → XP_023602947.1  exosome complex component RRP45 isoform X3

    UniProtKB/TrEMBL
    G1P449
    Conserved Domains (1) summary
    cd11368
    Location:6 → 268
    RNase_PH_RRP45; RRP45 subunit of eukaryotic exosome

  3. XM_023747178.1 → XP_023602946.1  exosome complex component RRP45 isoform X1

    UniProtKB/TrEMBL
    G1P449
    Conserved Domains (1) summary
    cd11368
    Location:6 → 268
    RNase_PH_RRP45; RRP45 subunit of eukaryotic exosome
Nucleotide Protein
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