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PRG4 proteoglycan 4 [ Myotis lucifugus (little brown bat) ]

Gene ID: 102442774, updated on 30-Mar-2024

Summary

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Gene symbol
PRG4
Gene description
proteoglycan 4
See related
Ensembl:ENSMLUG00000016901
Gene type
protein coding
RefSeq status
MODEL
Organism
Myotis lucifugus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yangochiroptera; Vespertilionidae; Myotis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
14
Annotation release Status Assembly Chr Location
102 current Myoluc2.0 (GCF_000147115.1) Unplaced Scaffold NW_005871113.1 (1819296..1834782)

NW_005871113.1Genomic Context describing neighboring genes Neighboring gene hemicentin 1 Neighboring gene 1-acyl-sn-glycerol-3-phosphate acyltransferase beta pseudogene Neighboring gene pre-mRNA-splicing factor ISY1 homolog Neighboring gene U6 spliceosomal RNA Neighboring gene small nucleolar RNA SNORA66 Neighboring gene translocated promoter region, nuclear basket protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005871113 Unplaced Scaffold Reference Myoluc2.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables polysaccharide binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables scavenger receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in collagen-containing extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: proteoglycan 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Myotis lucifugus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Myoluc2.0

Genomic

  1. NW_005871113.1 Reference Myoluc2.0

    Range
    1819296..1834782
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023754811.1 → XP_023610579.1  LOW QUALITY PROTEIN: proteoglycan 4

    UniProtKB/TrEMBL
    G1PVN1
    Related
    ENSMLUP00000015408.2, ENSMLUT00000016907.2
    Conserved Domains (2) summary
    smart00201
    Location:69 → 106
    SO; Somatomedin B -like domains
    cd00094
    Location:672 → 932
    HX; Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of ...
Nucleotide Protein
Heading Accession and Version

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